17 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106607835	Atypical kinase ADCK3, mitochondrial-like isoform X1. (633 aa)
	pomk	Kinase-like protein SgK196. (349 aa)
	atp5a1	annotation not available (566 aa)
	ENSSSAP00000069780	ATP synthase F1 subunit alpha. (329 aa)
	pgk	Phosphoglycerate kinase. (417 aa)
	LOC106613338	Serine/threonine-protein phosphatase. (519 aa)
	LOC106609566	Apoptotic protease-activating factor 1-like isoform X1. (1358 aa)
	LOC106572628	Serine/threonine-protein phosphatase. (491 aa)
	lonp1	Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family. (1014 aa)
	LOC106576445	Apoptotic protease-activating factor 1-like isoform X1. (1274 aa)
	LOC106568020	Phosphoglycerate kinase. (766 aa)
	LOC106612605	Glutamate--cysteine ligase catalytic subunit-like isoform X2. (639 aa)
	LOC106569424	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. (554 aa)
	LOC106571434	Atypical kinase ADCK3, mitochondrial-like isoform X2. (656 aa)
	gsh1	Glutamate--cysteine ligase catalytic subunit isoform X1. (640 aa)
	LOC106580568	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. (552 aa)
	msh2	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (928 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000069780	LOC106568020	ENSSSAP00000069780	ENSSSAP00000022946	ATP synthase F1 subunit alpha.	Phosphoglycerate kinase.	0.573
ENSSSAP00000069780	pgk	ENSSSAP00000069780	ENSSSAP00000069128	ATP synthase F1 subunit alpha.	Phosphoglycerate kinase.	0.573
LOC106568020	ENSSSAP00000069780	ENSSSAP00000022946	ENSSSAP00000069780	Phosphoglycerate kinase.	ATP synthase F1 subunit alpha.	0.573
LOC106568020	LOC106569424	ENSSSAP00000022946	ENSSSAP00000005589	Phosphoglycerate kinase.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.573
LOC106568020	LOC106580568	ENSSSAP00000022946	ENSSSAP00000101494	Phosphoglycerate kinase.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.573
LOC106568020	atp5a1	ENSSSAP00000022946	ENSSSAP00000079519	Phosphoglycerate kinase.	annotation not available	0.573
LOC106569424	LOC106568020	ENSSSAP00000005589	ENSSSAP00000022946	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Phosphoglycerate kinase.	0.573
LOC106569424	LOC106580568	ENSSSAP00000005589	ENSSSAP00000101494	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.900
LOC106569424	atp5a1	ENSSSAP00000005589	ENSSSAP00000079519	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	annotation not available	0.543
LOC106569424	pgk	ENSSSAP00000005589	ENSSSAP00000069128	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Phosphoglycerate kinase.	0.573
LOC106572628	LOC106613338	ENSSSAP00000046566	ENSSSAP00000054337	Serine/threonine-protein phosphatase.	Serine/threonine-protein phosphatase.	0.900
LOC106576445	LOC106609566	ENSSSAP00000023412	ENSSSAP00000053888	Apoptotic protease-activating factor 1-like isoform X1.	Apoptotic protease-activating factor 1-like isoform X1.	0.964
LOC106580568	LOC106568020	ENSSSAP00000101494	ENSSSAP00000022946	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Phosphoglycerate kinase.	0.573
LOC106580568	LOC106569424	ENSSSAP00000101494	ENSSSAP00000005589	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.900
LOC106580568	atp5a1	ENSSSAP00000101494	ENSSSAP00000079519	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	annotation not available	0.543
LOC106580568	pgk	ENSSSAP00000101494	ENSSSAP00000069128	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Phosphoglycerate kinase.	0.573
LOC106609566	LOC106576445	ENSSSAP00000053888	ENSSSAP00000023412	Apoptotic protease-activating factor 1-like isoform X1.	Apoptotic protease-activating factor 1-like isoform X1.	0.964
LOC106612605	gsh1	ENSSSAP00000014520	ENSSSAP00000114202	Glutamate--cysteine ligase catalytic subunit-like isoform X2.	Glutamate--cysteine ligase catalytic subunit isoform X1.	0.900
LOC106613338	LOC106572628	ENSSSAP00000054337	ENSSSAP00000046566	Serine/threonine-protein phosphatase.	Serine/threonine-protein phosphatase.	0.900
atp5a1	LOC106568020	ENSSSAP00000079519	ENSSSAP00000022946	annotation not available	Phosphoglycerate kinase.	0.573