(39 nodes) Myoblast differentiation network (Salmo salar)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSSAP00000014056	annotation not available (335 aa)
	rb1	Retinoblastoma-associated protein. (910 aa)
	LOC106576882	Serum response factor-like isoform X4. (566 aa)
	LOC106604571	Mastermind-like protein 1 isoform X1. (1033 aa)
	LOC106613002	Histone H4 transcription factor-like isoform X3. (588 aa)
	SRF	Serum response factor-like isoform X1. (596 aa)
	LOC106581133	Histone H4 transcription factor-like. (546 aa)
	maml1	Mastermind-like protein 1 isoform X1. (1061 aa)
	LOC106571235	Syndecan-1-like. (190 aa)
	GREM1-4	Gremlin-1-like. (181 aa)
	LOC106564784	Serum response factor-like isoform X1. (528 aa)
	LOC106607118	Probable ATP-dependent RNA helicase DDX17; Belongs to the DEAD box helicase family. (566 aa)
	FGF6-4	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (206 aa)
	hinfp	Histone H4 transcription factor. (496 aa)
	LOC100136517	Insulin-like growth factor I isoform X1. (198 aa)
	plekhm3	Pleckstrin homology domain-containing family M member 3 isoform X1. (755 aa)
	ENSSSAP00000046376	Beta-galactoside-binding lectin-like. (180 aa)
	DDX5	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family. (659 aa)
	GREM1-3	Gremlin-1-like. (255 aa)
	FGF6-3	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (207 aa)
	LOC106609475	Insulin-like growth factor I isoform X1. (211 aa)
	GREM1-2	Gremlin-1-like. (168 aa)
	LOC106574308	B-cell CLL/lymphoma 9 protein-like isoform X1. (1563 aa)
	ENSSSAP00000031733	annotation not available (466 aa)
	ENSSSAP00000029295	annotation not available (134 aa)
	ENSSSAP00000028991	annotation not available (186 aa)
	ENSSSAP00000028817	annotation not available (61 aa)
	FGF6-2	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (201 aa)
	ENSSSAP00000017280	annotation not available (634 aa)
	ENSSSAP00000017157	Beta-galactoside-binding lectin-like. (145 aa)
	LOC106575079	B-cell CLL/lymphoma 9 protein-like. (1549 aa)
	GREM1	Gremlin. (183 aa)
	LOC106564424	Galectin. (143 aa)
	FGF6	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (207 aa)
	LOC106601225	Probable ATP-dependent RNA helicase DDX17 isoform X1; Belongs to the DEAD box helicase family. (631 aa)
	LOC106590712	Galectin. (169 aa)
	LOC106601397	Probable ATP-dependent RNA helicase DDX5 isoform X1; Belongs to the DEAD box helicase family. (634 aa)
	leg	Galectin. (134 aa)
	LOC106584839	Serum response factor-like isoform X1. (529 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX5	LOC106601397	ENSSSAP00000044729	ENSSSAP00000001672	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	Probable ATP-dependent RNA helicase DDX5 isoform X1; Belongs to the DEAD box helicase family.	0.901
ENSSSAP00000028817	LOC106571235	ENSSSAP00000028817	ENSSSAP00000096889	annotation not available	Syndecan-1-like.	0.575
FGF6	LOC106571235	ENSSSAP00000005113	ENSSSAP00000096889	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Syndecan-1-like.	0.575
FGF6	LOC106609475	ENSSSAP00000005113	ENSSSAP00000040530	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Insulin-like growth factor I isoform X1.	0.458
FGF6-2	LOC106571235	ENSSSAP00000023851	ENSSSAP00000096889	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Syndecan-1-like.	0.575
FGF6-2	LOC106609475	ENSSSAP00000023851	ENSSSAP00000040530	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Insulin-like growth factor I isoform X1.	0.458
FGF6-3	LOC106571235	ENSSSAP00000043900	ENSSSAP00000096889	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Syndecan-1-like.	0.575
FGF6-3	LOC106609475	ENSSSAP00000043900	ENSSSAP00000040530	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Insulin-like growth factor I isoform X1.	0.458
FGF6-4	LOC106571235	ENSSSAP00000080584	ENSSSAP00000096889	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Syndecan-1-like.	0.575
FGF6-4	LOC106609475	ENSSSAP00000080584	ENSSSAP00000040530	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Insulin-like growth factor I isoform X1.	0.458
LOC106571235	ENSSSAP00000028817	ENSSSAP00000096889	ENSSSAP00000028817	Syndecan-1-like.	annotation not available	0.575
LOC106571235	FGF6	ENSSSAP00000096889	ENSSSAP00000005113	Syndecan-1-like.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.575
LOC106571235	FGF6-2	ENSSSAP00000096889	ENSSSAP00000023851	Syndecan-1-like.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.575
LOC106571235	FGF6-3	ENSSSAP00000096889	ENSSSAP00000043900	Syndecan-1-like.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.575
LOC106571235	FGF6-4	ENSSSAP00000096889	ENSSSAP00000080584	Syndecan-1-like.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.575
LOC106601397	DDX5	ENSSSAP00000001672	ENSSSAP00000044729	Probable ATP-dependent RNA helicase DDX5 isoform X1; Belongs to the DEAD box helicase family.	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	0.901
LOC106604571	maml1	ENSSSAP00000105008	ENSSSAP00000097496	Mastermind-like protein 1 isoform X1.	Mastermind-like protein 1 isoform X1.	0.900
LOC106609475	FGF6	ENSSSAP00000040530	ENSSSAP00000005113	Insulin-like growth factor I isoform X1.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.458
LOC106609475	FGF6-2	ENSSSAP00000040530	ENSSSAP00000023851	Insulin-like growth factor I isoform X1.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.458
LOC106609475	FGF6-3	ENSSSAP00000040530	ENSSSAP00000043900	Insulin-like growth factor I isoform X1.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.458