18 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	csf1	Macrophage colony-stimulating factor 1. (591 aa)
	LOC100136559	Transforming growth factor beta; Belongs to the TGF-beta family. (381 aa)
	C1QC-2	Complement C1q subcomponent subunit C-like. (269 aa)
	ENSSSAP00000025204	annotation not available (182 aa)
	LOC100136459	Caspase 8-like protein. (499 aa)
	LOC106587129	FAS-associated death domain protein-like. (221 aa)
	il34	Interleukin-34. (227 aa)
	LOC106613337	Transforming growth factor beta; Belongs to the TGF-beta family. (384 aa)
	adipoq	Adiponectin. (296 aa)
	LOC106582462	Caspase-8-like isoform X1; Belongs to the peptidase C14A family. (604 aa)
	LOC106573710	Interleukin-34-like. (211 aa)
	LOC106586254	Caspase-8-like isoform X1; Belongs to the peptidase C14A family. (581 aa)
	LOC106571887	Uncharacterized protein LOC106571887. (289 aa)
	LOC106563563	Transforming growth factor beta; Belongs to the TGF-beta family. (390 aa)
	LOC106566647	Uncharacterized protein LOC106566647. (276 aa)
	rb1	Retinoblastoma-associated protein. (910 aa)
	LOC106561969	FAS-associated death domain protein-like. (195 aa)
	LOC106565101	Uncharacterized protein LOC106565101. (565 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000025204	LOC106561969	ENSSSAP00000025204	ENSSSAP00000115282	annotation not available	FAS-associated death domain protein-like.	0.973
ENSSSAP00000025204	LOC106587129	ENSSSAP00000025204	ENSSSAP00000037844	annotation not available	FAS-associated death domain protein-like.	0.973
LOC100136459	LOC106561969	ENSSSAP00000034747	ENSSSAP00000115282	Caspase 8-like protein.	FAS-associated death domain protein-like.	0.982
LOC100136459	LOC106587129	ENSSSAP00000034747	ENSSSAP00000037844	Caspase 8-like protein.	FAS-associated death domain protein-like.	0.982
LOC100136559	LOC106563563	ENSSSAP00000004983	ENSSSAP00000109831	Transforming growth factor beta; Belongs to the TGF-beta family.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.900
LOC100136559	LOC106613337	ENSSSAP00000004983	ENSSSAP00000053777	Transforming growth factor beta; Belongs to the TGF-beta family.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.901
LOC106561969	ENSSSAP00000025204	ENSSSAP00000115282	ENSSSAP00000025204	FAS-associated death domain protein-like.	annotation not available	0.973
LOC106561969	LOC100136459	ENSSSAP00000115282	ENSSSAP00000034747	FAS-associated death domain protein-like.	Caspase 8-like protein.	0.982
LOC106561969	LOC106582462	ENSSSAP00000115282	ENSSSAP00000082122	FAS-associated death domain protein-like.	Caspase-8-like isoform X1; Belongs to the peptidase C14A family.	0.997
LOC106561969	LOC106586254	ENSSSAP00000115282	ENSSSAP00000101573	FAS-associated death domain protein-like.	Caspase-8-like isoform X1; Belongs to the peptidase C14A family.	0.997
LOC106561969	LOC106587129	ENSSSAP00000115282	ENSSSAP00000037844	FAS-associated death domain protein-like.	FAS-associated death domain protein-like.	0.900
LOC106563563	LOC100136559	ENSSSAP00000109831	ENSSSAP00000004983	Transforming growth factor beta; Belongs to the TGF-beta family.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.900
LOC106563563	LOC106613337	ENSSSAP00000109831	ENSSSAP00000053777	Transforming growth factor beta; Belongs to the TGF-beta family.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.901
LOC106565101	LOC106573710	ENSSSAP00000120009	ENSSSAP00000086179	Uncharacterized protein LOC106565101.	Interleukin-34-like.	0.812
LOC106565101	csf1	ENSSSAP00000120009	ENSSSAP00000119084	Uncharacterized protein LOC106565101.	Macrophage colony-stimulating factor 1.	0.901
LOC106565101	il34	ENSSSAP00000120009	ENSSSAP00000053012	Uncharacterized protein LOC106565101.	Interleukin-34.	0.812
LOC106566647	LOC106573710	ENSSSAP00000110648	ENSSSAP00000086179	Uncharacterized protein LOC106566647.	Interleukin-34-like.	0.812
LOC106566647	il34	ENSSSAP00000110648	ENSSSAP00000053012	Uncharacterized protein LOC106566647.	Interleukin-34.	0.812
LOC106571887	LOC106573710	ENSSSAP00000108598	ENSSSAP00000086179	Uncharacterized protein LOC106571887.	Interleukin-34-like.	0.812
LOC106571887	il34	ENSSSAP00000108598	ENSSSAP00000053012	Uncharacterized protein LOC106571887.	Interleukin-34.	0.812