48 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106582526	Fibronectin-like isoform X1. (2965 aa)
	LOC106563145	NMDA receptor synaptonuclear signaling and neuronal migration factor-like. (529 aa)
	LOC106576882	Serum response factor-like isoform X4. (566 aa)
	LOC106585993	Protein RUFY3-like. (369 aa)
	LOC106593270	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (632 aa)
	ENSSSAP00000062678	Si:dkey-280e21.3. (494 aa)
	LOC106589582	Parvalbumin, thymic CPV3-like; Belongs to the parvalbumin family. (235 aa)
	LOC106568007	Drebrin-like isoform X3. (595 aa)
	LOC106594345	Bone morphogenetic protein receptor type-2-like. (698 aa)
	NSMF	NMDA receptor synaptonuclear signaling and neuronal migration factor-like isoform X2. (579 aa)
	LOC106564821	Spastin; ATP-dependent microtubule severing protein that specifically recognizes and cuts microtubules that are polyglutamylated. Preferentially recognizes and acts on microtubules decorated with short polyglutamate tails: severing activity increases as the number of glutamates per tubulin rises from one to eight, but decreases beyond this glutamylation threshold. Microtubule severing promotes reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Required for membrane traffic from the endoplasmic reticulum (ER) to the Go [...] (746 aa)
	LOC106572978	Neural cell adhesion molecule L1.1-like. (911 aa)
	LOC106561861	Immunoglobulin superfamily containing leucine-rich repeat protein 2-like. (711 aa)
	LOC106584839	Serum response factor-like isoform X1. (529 aa)
	LOC106610070	Parvalbumin, thymic CPV3-like; Belongs to the parvalbumin family. (109 aa)
	LOC106591760	Protrudin-like isoform X3. (455 aa)
	LOC106601824	Parvalbumin, thymic CPV3-like; Belongs to the parvalbumin family. (109 aa)
	LOC106610982	Golgin subfamily A member 4-like isoform X2. (1814 aa)
	LOC106567246	NMDA receptor synaptonuclear signaling and neuronal migration factor-like. (571 aa)
	LOC106580156	Drebrin-like protein B. (715 aa)
	LOC106572109	Activity-dependent neuroprotector homeobox protein-like. (1044 aa)
	LOC106564318	Protrudin-like isoform X3. (435 aa)
	LOC106584836	Immunoglobulin superfamily containing leucine-rich repeat protein 2-like. (719 aa)
	LOC106562116	semaphorin-7A-like isoform X1; Belongs to the semaphorin family. (633 aa)
	LOC106572712	Neural cell adhesion molecule L1-like isoform X2. (1289 aa)
	LOC106606664	Parvalbumin, thymic CPV3-like. (109 aa)
	CDKL5	Cyclin-dependent kinase-like 5 isoform X1. (848 aa)
	LOC106605326	semaphorin-7A-like; Belongs to the semaphorin family. (640 aa)
	bmpr2	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (444 aa)
	LOC106603483	Drebrin-like isoform X3. (515 aa)
	LOC106578778	Spastin-like isoform X2; Belongs to the AAA ATPase family. (500 aa)
	ENSSSAP00000028991	annotation not available (186 aa)
	golga4	Golgin subfamily A member 4 isoform X3. (2201 aa)
	LOC106563099	Drebrin-like protein. (338 aa)
	rufy3	Protein RUFY3 isoform X1. (672 aa)
	LOC106586197	Spastin; ATP-dependent microtubule severing protein that specifically recognizes and cuts microtubules that are polyglutamylated. Preferentially recognizes and acts on microtubules decorated with short polyglutamate tails: severing activity increases as the number of glutamates per tubulin rises from one to eight, but decreases beyond this glutamylation threshold. Microtubule severing promotes reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Required for membrane traffic from the endoplasmic reticulum (ER) to the Go [...] (593 aa)
	LOC106600438	Cyclin-dependent kinase-like 5 isoform X1. (931 aa)
	dbnl	Drebrin-like protein isoform X1. (608 aa)
	shtn1	Shootin-1. (441 aa)
	SRF	Serum response factor-like isoform X1. (596 aa)
	LOC106585805	Drebrin-like protein B. (707 aa)
	LOC106579831	Drebrin-like protein isoform X1. (500 aa)
	LOC106587207	semaphorin-7A-like; Belongs to the semaphorin family. (631 aa)
	LOC106564784	Serum response factor-like isoform X1. (528 aa)
	ENSSSAP00000090769	Si:ch211-113g11.6. (575 aa)
	nsmf	NMDA receptor synaptonuclear signaling and neuronal migration factor isoform X4. (518 aa)
	LOC106566452	Activity-dependent neuroprotector homeobox protein-like. (1097 aa)
	LOC106567028	Neural cell adhesion molecule L1-like isoform X5. (1472 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000062678	LOC106567028	ENSSSAP00000062678	ENSSSAP00000073685	Si:dkey-280e21.3.	Neural cell adhesion molecule L1-like isoform X5.	0.550
ENSSSAP00000062678	LOC106572712	ENSSSAP00000062678	ENSSSAP00000019510	Si:dkey-280e21.3.	Neural cell adhesion molecule L1-like isoform X2.	0.550
ENSSSAP00000062678	LOC106572978	ENSSSAP00000062678	ENSSSAP00000050233	Si:dkey-280e21.3.	Neural cell adhesion molecule L1.1-like.	0.550
ENSSSAP00000062678	LOC106585993	ENSSSAP00000062678	ENSSSAP00000070786	Si:dkey-280e21.3.	Protein RUFY3-like.	0.604
ENSSSAP00000062678	rufy3	ENSSSAP00000062678	ENSSSAP00000038093	Si:dkey-280e21.3.	Protein RUFY3 isoform X1.	0.604
LOC106564318	LOC106564821	ENSSSAP00000017455	ENSSSAP00000052586	Protrudin-like isoform X3.	Spastin; ATP-dependent microtubule severing protein that specifically recognizes and cuts microtubules that are polyglutamylated. Preferentially recognizes and acts on microtubules decorated with short polyglutamate tails: severing activity increases as the number of glutamates per tubulin rises from one to eight, but decreases beyond this glutamylation threshold. Microtubule severing promotes reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Required for membrane traffic from the endoplasmic reticulum (ER) to the Go [...]	0.444
LOC106564318	LOC106578778	ENSSSAP00000017455	ENSSSAP00000028117	Protrudin-like isoform X3.	Spastin-like isoform X2; Belongs to the AAA ATPase family.	0.444
LOC106564318	LOC106586197	ENSSSAP00000017455	ENSSSAP00000043879	Protrudin-like isoform X3.	Spastin; ATP-dependent microtubule severing protein that specifically recognizes and cuts microtubules that are polyglutamylated. Preferentially recognizes and acts on microtubules decorated with short polyglutamate tails: severing activity increases as the number of glutamates per tubulin rises from one to eight, but decreases beyond this glutamylation threshold. Microtubule severing promotes reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Required for membrane traffic from the endoplasmic reticulum (ER) to the Go [...]	0.444
LOC106564821	LOC106564318	ENSSSAP00000052586	ENSSSAP00000017455	Spastin; ATP-dependent microtubule severing protein that specifically recognizes and cuts microtubules that are polyglutamylated. Preferentially recognizes and acts on microtubules decorated with short polyglutamate tails: severing activity increases as the number of glutamates per tubulin rises from one to eight, but decreases beyond this glutamylation threshold. Microtubule severing promotes reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Required for membrane traffic from the endoplasmic reticulum (ER) to the Go [...]	Protrudin-like isoform X3.	0.444
LOC106564821	LOC106591760	ENSSSAP00000052586	ENSSSAP00000001900	Spastin; ATP-dependent microtubule severing protein that specifically recognizes and cuts microtubules that are polyglutamylated. Preferentially recognizes and acts on microtubules decorated with short polyglutamate tails: severing activity increases as the number of glutamates per tubulin rises from one to eight, but decreases beyond this glutamylation threshold. Microtubule severing promotes reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Required for membrane traffic from the endoplasmic reticulum (ER) to the Go [...]	Protrudin-like isoform X3.	0.444
LOC106567028	ENSSSAP00000062678	ENSSSAP00000073685	ENSSSAP00000062678	Neural cell adhesion molecule L1-like isoform X5.	Si:dkey-280e21.3.	0.550
LOC106567028	LOC106572712	ENSSSAP00000073685	ENSSSAP00000019510	Neural cell adhesion molecule L1-like isoform X5.	Neural cell adhesion molecule L1-like isoform X2.	0.901
LOC106572712	ENSSSAP00000062678	ENSSSAP00000019510	ENSSSAP00000062678	Neural cell adhesion molecule L1-like isoform X2.	Si:dkey-280e21.3.	0.550
LOC106572712	LOC106567028	ENSSSAP00000019510	ENSSSAP00000073685	Neural cell adhesion molecule L1-like isoform X2.	Neural cell adhesion molecule L1-like isoform X5.	0.901
LOC106572978	ENSSSAP00000062678	ENSSSAP00000050233	ENSSSAP00000062678	Neural cell adhesion molecule L1.1-like.	Si:dkey-280e21.3.	0.550
LOC106578778	LOC106564318	ENSSSAP00000028117	ENSSSAP00000017455	Spastin-like isoform X2; Belongs to the AAA ATPase family.	Protrudin-like isoform X3.	0.444
LOC106578778	LOC106591760	ENSSSAP00000028117	ENSSSAP00000001900	Spastin-like isoform X2; Belongs to the AAA ATPase family.	Protrudin-like isoform X3.	0.444
LOC106585993	ENSSSAP00000062678	ENSSSAP00000070786	ENSSSAP00000062678	Protein RUFY3-like.	Si:dkey-280e21.3.	0.604
LOC106586197	LOC106564318	ENSSSAP00000043879	ENSSSAP00000017455	Spastin; ATP-dependent microtubule severing protein that specifically recognizes and cuts microtubules that are polyglutamylated. Preferentially recognizes and acts on microtubules decorated with short polyglutamate tails: severing activity increases as the number of glutamates per tubulin rises from one to eight, but decreases beyond this glutamylation threshold. Microtubule severing promotes reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Required for membrane traffic from the endoplasmic reticulum (ER) to the Go [...]	Protrudin-like isoform X3.	0.444
LOC106586197	LOC106591760	ENSSSAP00000043879	ENSSSAP00000001900	Spastin; ATP-dependent microtubule severing protein that specifically recognizes and cuts microtubules that are polyglutamylated. Preferentially recognizes and acts on microtubules decorated with short polyglutamate tails: severing activity increases as the number of glutamates per tubulin rises from one to eight, but decreases beyond this glutamylation threshold. Microtubule severing promotes reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Required for membrane traffic from the endoplasmic reticulum (ER) to the Go [...]	Protrudin-like isoform X3.	0.444