30 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106610849	Cytochrome P450 1B1-like; Belongs to the cytochrome P450 family. (523 aa)
	ENSSSAP00000038233	annotation not available (527 aa)
	ENSSSAP00000041396	annotation not available (74 aa)
	LOC106601961	LOW QUALITY PROTEIN: cytokine receptor-like factor 3. (443 aa)
	ENSSSAP00000050367	Cytochrome P450 family 1 subfamily C. (130 aa)
	LOC106576803	Cytochrome P450 1B1-like; Belongs to the cytochrome P450 family. (539 aa)
	ENSSSAP00000057692	SPT5 homolog, DSIF elongation factor subunit. (1069 aa)
	LOC100136580	Prolactin isoform X1. (220 aa)
	ENSSSAP00000066447	annotation not available (173 aa)
	LOC106598132	Cytokine receptor-like factor 3. (308 aa)
	ENSSSAP00000067430	annotation not available (195 aa)
	LOC106593855	Prolactin-like. (208 aa)
	IL-10	Interleukin-10-like. (123 aa)
	ENSSSAP00000069206	annotation not available (66 aa)
	LOC100136512	Interleukin-10. (300 aa)
	LOC106566262	Interleukin-10-like. (192 aa)
	LOC106580766	Transcription elongation factor SPT5. (1085 aa)
	F2R	Proteinase-activated receptor 1-like. (458 aa)
	F2R-2	Proteinase-activated receptor 1. (497 aa)
	LOC106592567	Prolactin-like. (283 aa)
	ENSSSAP00000031164	annotation not available (186 aa)
	pibf1	Progesterone-induced-blocking factor 1 isoform X1. (767 aa)
	ENSSSAP00000028063	annotation not available (66 aa)
	prl	Prolactin. (190 aa)
	ENSSSAP00000026216	annotation not available (109 aa)
	ENSSSAP00000022533	annotation not available (66 aa)
	ENSSSAP00000022528	annotation not available (66 aa)
	LOC106604807	Cytochrome P450 1B1-like; Belongs to the cytochrome P450 family. (532 aa)
	ENSSSAP00000012773	annotation not available (595 aa)
	ENSSSAP00000009854	Cytochrome P450, family 1, subfamily C, polypeptide 1. (569 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F2R	F2R-2	ENSSSAP00000108863	ENSSSAP00000111443	Proteinase-activated receptor 1-like.	Proteinase-activated receptor 1.	0.901
F2R-2	F2R	ENSSSAP00000111443	ENSSSAP00000108863	Proteinase-activated receptor 1.	Proteinase-activated receptor 1-like.	0.901
IL-10	LOC100136512	ENSSSAP00000068333	ENSSSAP00000080196	Interleukin-10-like.	Interleukin-10.	0.900
LOC100136512	IL-10	ENSSSAP00000080196	ENSSSAP00000068333	Interleukin-10.	Interleukin-10-like.	0.900
LOC106576803	LOC106604807	ENSSSAP00000055749	ENSSSAP00000018030	Cytochrome P450 1B1-like; Belongs to the cytochrome P450 family.	Cytochrome P450 1B1-like; Belongs to the cytochrome P450 family.	0.900
LOC106604807	LOC106576803	ENSSSAP00000018030	ENSSSAP00000055749	Cytochrome P450 1B1-like; Belongs to the cytochrome P450 family.	Cytochrome P450 1B1-like; Belongs to the cytochrome P450 family.	0.900