19 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106566047	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (389 aa)
	LOC106582740	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (383 aa)
	LOC106605482	Zinc finger protein ZFPM2-like. (1039 aa)
	LOC100136517	Insulin-like growth factor I isoform X1. (198 aa)
	LOC106604553	SAM and SH3 domain-containing protein 3-like. (399 aa)
	LOC106609776	Smoothened homolog; Belongs to the G-protein coupled receptor Fz/Smo family. (832 aa)
	parp2	Poly [ADP-ribose] polymerase. (658 aa)
	sash3	SAM and SH3 domain-containing protein 3. (400 aa)
	LOC106570392	Endothelin-1-like. (203 aa)
	LOC106609760	Smoothened homolog. (529 aa)
	ENSSSAP00000029131	Zinc finger protein, FOG family member 2a. (988 aa)
	hlx	H2.0-like homeobox protein isoform X1. (366 aa)
	LOC106609475	Insulin-like growth factor I isoform X1. (211 aa)
	LOC100136550	Insulin-like growth factor II. (214 aa)
	LOC106588221	Zinc finger protein ZFPM2-like isoform X1. (1084 aa)
	Akap6	A-kinase anchoring protein 6. (1167 aa)
	AKAP6	A-kinase anchor protein 6. (2315 aa)
	LOC106589028	Uncharacterized protein LOC106589028. (275 aa)
	LOC106607589	H2.0-like homeobox protein isoform X1. (370 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100136517	LOC100136550	ENSSSAP00000052543	ENSSSAP00000051358	Insulin-like growth factor I isoform X1.	Insulin-like growth factor II.	0.744
LOC100136550	LOC100136517	ENSSSAP00000051358	ENSSSAP00000052543	Insulin-like growth factor II.	Insulin-like growth factor I isoform X1.	0.744
LOC100136550	LOC106609475	ENSSSAP00000051358	ENSSSAP00000040530	Insulin-like growth factor II.	Insulin-like growth factor I isoform X1.	0.777
LOC106566047	LOC106609760	ENSSSAP00000074487	ENSSSAP00000019830	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Smoothened homolog.	0.531
LOC106566047	LOC106609776	ENSSSAP00000074487	ENSSSAP00000007393	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Smoothened homolog; Belongs to the G-protein coupled receptor Fz/Smo family.	0.531
LOC106570392	LOC106589028	ENSSSAP00000019078	ENSSSAP00000076828	Endothelin-1-like.	Uncharacterized protein LOC106589028.	0.900
LOC106582740	LOC106609760	ENSSSAP00000065965	ENSSSAP00000019830	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Smoothened homolog.	0.531
LOC106582740	LOC106609776	ENSSSAP00000065965	ENSSSAP00000007393	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Smoothened homolog; Belongs to the G-protein coupled receptor Fz/Smo family.	0.531
LOC106589028	LOC106570392	ENSSSAP00000076828	ENSSSAP00000019078	Uncharacterized protein LOC106589028.	Endothelin-1-like.	0.900
LOC106609475	LOC100136550	ENSSSAP00000040530	ENSSSAP00000051358	Insulin-like growth factor I isoform X1.	Insulin-like growth factor II.	0.777
LOC106609760	LOC106566047	ENSSSAP00000019830	ENSSSAP00000074487	Smoothened homolog.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.531
LOC106609760	LOC106582740	ENSSSAP00000019830	ENSSSAP00000065965	Smoothened homolog.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.531
LOC106609776	LOC106566047	ENSSSAP00000007393	ENSSSAP00000074487	Smoothened homolog; Belongs to the G-protein coupled receptor Fz/Smo family.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.531
LOC106609776	LOC106582740	ENSSSAP00000007393	ENSSSAP00000065965	Smoothened homolog; Belongs to the G-protein coupled receptor Fz/Smo family.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.531