(36 nodes) Thymus development network (Salmo salar)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SLC46A2	Thymic stromal cotransporter homolog. (467 aa)
	LOC106585096	T-box transcription factor TBX1-like isoform X1. (517 aa)
	LOC106561969	FAS-associated death domain protein-like. (195 aa)
	LOC106561202	semaphorin-3D-like; Belongs to the semaphorin family. (818 aa)
	LOC106576882	Serum response factor-like isoform X4. (566 aa)
	LOC106584988	Squamous cell carcinoma antigen recognized by T-cells 3-like isoform X1. (958 aa)
	ENSSSAP00000105257	Serine-protein kinase ATM-like. (111 aa)
	SRF	Serum response factor-like isoform X1. (596 aa)
	Bcl2l11	Bcl-2-like protein 11. (155 aa)
	LOC106564784	Serum response factor-like isoform X1. (528 aa)
	ENSSSAP00000094901	Solute carrier family 46 member 2. (341 aa)
	LOC106580488	T-box transcription factor TBX1 isoform X1. (520 aa)
	ENSSSAP00000092773	annotation not available (95 aa)
	LOC106612922	Forkhead box protein N1-like isoform X1. (592 aa)
	sart3	Squamous cell carcinoma antigen recognized by T-cells 3 isoform X1. (957 aa)
	LOC106566214	semaphorin-3D-like; Belongs to the semaphorin family. (780 aa)
	LOC106608126	Bcl-2-like protein 11. (214 aa)
	med24	Mediator of RNA polymerase II transcription subunit 24 isoform X4. (1009 aa)
	LOC106595452	Mitotic spindle assembly checkpoint protein MAD1-like. (206 aa)
	LOC106581023	Forkhead box protein N1-like. (604 aa)
	ripk4	Receptor-interacting serine/threonine-protein kinase 4 isoform X1; Belongs to the protein kinase superfamily. (490 aa)
	LOC106571130	Zinc finger and BTB domain-containing protein 1-like. (697 aa)
	LOC106580899	T-box transcription factor TBX1-like. (460 aa)
	atm	Non-specific serine/threonine protein kinase. (3172 aa)
	LOC106573452	semaphorin-3D-like; Belongs to the semaphorin family. (807 aa)
	LOC106587129	FAS-associated death domain protein-like. (221 aa)
	ENSSSAP00000028991	annotation not available (186 aa)
	LOC106563167	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (468 aa)
	ENSSSAP00000018198	Semaphorin-3D-like. (318 aa)
	wdr55	WD repeat-containing protein 55; Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis. Belongs to the WD repeat WDR55 family. (411 aa)
	LOC106573411	Receptor-interacting serine/threonine-protein kinase 3-like; Belongs to the protein kinase superfamily. (365 aa)
	rag2	V(D)J recombination-activating protein 2. (533 aa)
	face1	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (513 aa)
	LOC106592457	Serine/threonine-protein kinase 10-like isoform X1. (314 aa)
	LOC106594579	Mitotic spindle assembly checkpoint protein MAD1-like. (289 aa)
	LOC106584839	Serum response factor-like isoform X1. (529 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Bcl2l11	LOC106608126	ENSSSAP00000102692	ENSSSAP00000066497	Bcl-2-like protein 11.	Bcl-2-like protein 11.	0.901
LOC106561969	LOC106573411	ENSSSAP00000115282	ENSSSAP00000012385	FAS-associated death domain protein-like.	Receptor-interacting serine/threonine-protein kinase 3-like; Belongs to the protein kinase superfamily.	0.968
LOC106561969	LOC106587129	ENSSSAP00000115282	ENSSSAP00000037844	FAS-associated death domain protein-like.	FAS-associated death domain protein-like.	0.900
LOC106561969	LOC106592457	ENSSSAP00000115282	ENSSSAP00000000546	FAS-associated death domain protein-like.	Serine/threonine-protein kinase 10-like isoform X1.	0.968
LOC106561969	ripk4	ENSSSAP00000115282	ENSSSAP00000057378	FAS-associated death domain protein-like.	Receptor-interacting serine/threonine-protein kinase 4 isoform X1; Belongs to the protein kinase superfamily.	0.968
LOC106573411	LOC106561969	ENSSSAP00000012385	ENSSSAP00000115282	Receptor-interacting serine/threonine-protein kinase 3-like; Belongs to the protein kinase superfamily.	FAS-associated death domain protein-like.	0.968
LOC106573411	LOC106587129	ENSSSAP00000012385	ENSSSAP00000037844	Receptor-interacting serine/threonine-protein kinase 3-like; Belongs to the protein kinase superfamily.	FAS-associated death domain protein-like.	0.968
LOC106573411	ripk4	ENSSSAP00000012385	ENSSSAP00000057378	Receptor-interacting serine/threonine-protein kinase 3-like; Belongs to the protein kinase superfamily.	Receptor-interacting serine/threonine-protein kinase 4 isoform X1; Belongs to the protein kinase superfamily.	0.902
LOC106581023	rag2	ENSSSAP00000057715	ENSSSAP00000009083	Forkhead box protein N1-like.	V(D)J recombination-activating protein 2.	0.632
LOC106587129	LOC106561969	ENSSSAP00000037844	ENSSSAP00000115282	FAS-associated death domain protein-like.	FAS-associated death domain protein-like.	0.900
LOC106587129	LOC106573411	ENSSSAP00000037844	ENSSSAP00000012385	FAS-associated death domain protein-like.	Receptor-interacting serine/threonine-protein kinase 3-like; Belongs to the protein kinase superfamily.	0.968
LOC106587129	LOC106592457	ENSSSAP00000037844	ENSSSAP00000000546	FAS-associated death domain protein-like.	Serine/threonine-protein kinase 10-like isoform X1.	0.968
LOC106587129	ripk4	ENSSSAP00000037844	ENSSSAP00000057378	FAS-associated death domain protein-like.	Receptor-interacting serine/threonine-protein kinase 4 isoform X1; Belongs to the protein kinase superfamily.	0.968
LOC106592457	LOC106561969	ENSSSAP00000000546	ENSSSAP00000115282	Serine/threonine-protein kinase 10-like isoform X1.	FAS-associated death domain protein-like.	0.968
LOC106592457	LOC106587129	ENSSSAP00000000546	ENSSSAP00000037844	Serine/threonine-protein kinase 10-like isoform X1.	FAS-associated death domain protein-like.	0.968
LOC106594579	LOC106595452	ENSSSAP00000000437	ENSSSAP00000058508	Mitotic spindle assembly checkpoint protein MAD1-like.	Mitotic spindle assembly checkpoint protein MAD1-like.	0.901
LOC106595452	LOC106594579	ENSSSAP00000058508	ENSSSAP00000000437	Mitotic spindle assembly checkpoint protein MAD1-like.	Mitotic spindle assembly checkpoint protein MAD1-like.	0.901
LOC106608126	Bcl2l11	ENSSSAP00000066497	ENSSSAP00000102692	Bcl-2-like protein 11.	Bcl-2-like protein 11.	0.901
LOC106612922	rag2	ENSSSAP00000077909	ENSSSAP00000009083	Forkhead box protein N1-like isoform X1.	V(D)J recombination-activating protein 2.	0.632
rag2	LOC106581023	ENSSSAP00000009083	ENSSSAP00000057715	V(D)J recombination-activating protein 2.	Forkhead box protein N1-like.	0.632