30 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	vps52	Vacuolar protein sorting-associated protein 52 homolog. (724 aa)
	LOC106599911	Forkhead box protein F2-like. (383 aa)
	LOC106560371	Forkhead box protein F2-like. (383 aa)
	pkdcc	Extracellular tyrosine-protein kinase PKDCC. (545 aa)
	LOC106610624	Extracellular tyrosine-protein kinase PKDCC-like. (485 aa)
	hlx	H2.0-like homeobox protein isoform X1. (366 aa)
	LOC106584076	Forkhead box protein F2-like. (380 aa)
	ENSSSAP00000035947	Extracellular tyrosine-protein kinase PKDCC&#160. (527 aa)
	msc	Musculin. (173 aa)
	LOC106599328	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. (415 aa)
	LOC106609474	Achaete-scute homolog 1a-like. (194 aa)
	LOC106581182	Hepatocyte nuclear factor 1-beta-A-like isoform X1. (582 aa)
	LOC106612790	Hepatocyte nuclear factor 1-beta-A-like isoform X1. (581 aa)
	TCF21	Transcription factor 21. (214 aa)
	LOC100286442	Vacuolar protein sorting-associated protein 52 homolog isoform X4. (292 aa)
	tcf21	Transcription factor 21. (177 aa)
	LOC106613407	Transcriptional coactivator YAP1-like. (328 aa)
	ENSSSAP00000057130	Musculin (activated B-cell factor-1). (179 aa)
	LOC106576285	Achaete-scute homolog 1a. (194 aa)
	LOC106604392	Transforming growth factor beta; Belongs to the TGF-beta family. (433 aa)
	LOC106612106	Transforming growth factor beta; Belongs to the TGF-beta family. (425 aa)
	foxf2	Forkhead box protein F2. (390 aa)
	LOC106578610	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. (421 aa)
	LOC106581582	Transcriptional coactivator YAP1-like. (151 aa)
	LOC106605021	Transforming growth factor beta; Belongs to the TGF-beta family. (411 aa)
	LOC106607589	H2.0-like homeobox protein isoform X1. (370 aa)
	LOC106569233	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. (415 aa)
	LOC106584161	Transforming growth factor beta; Belongs to the TGF-beta family. (411 aa)
	shh	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. (421 aa)
	LOC106608828	Extracellular tyrosine-protein kinase PKDCC-like isoform X1. (482 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100286442	LOC106569233	ENSSSAP00000048715	ENSSSAP00000079095	Vacuolar protein sorting-associated protein 52 homolog isoform X4.	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	0.649
LOC100286442	LOC106578610	ENSSSAP00000048715	ENSSSAP00000067823	Vacuolar protein sorting-associated protein 52 homolog isoform X4.	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	0.649
LOC100286442	LOC106599328	ENSSSAP00000048715	ENSSSAP00000039338	Vacuolar protein sorting-associated protein 52 homolog isoform X4.	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	0.649
LOC100286442	shh	ENSSSAP00000048715	ENSSSAP00000084017	Vacuolar protein sorting-associated protein 52 homolog isoform X4.	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	0.649
LOC106569233	LOC100286442	ENSSSAP00000079095	ENSSSAP00000048715	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	Vacuolar protein sorting-associated protein 52 homolog isoform X4.	0.649
LOC106569233	vps52	ENSSSAP00000079095	ENSSSAP00000112306	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	Vacuolar protein sorting-associated protein 52 homolog.	0.649
LOC106578610	LOC100286442	ENSSSAP00000067823	ENSSSAP00000048715	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	Vacuolar protein sorting-associated protein 52 homolog isoform X4.	0.649
LOC106578610	vps52	ENSSSAP00000067823	ENSSSAP00000112306	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	Vacuolar protein sorting-associated protein 52 homolog.	0.649
LOC106599328	LOC100286442	ENSSSAP00000039338	ENSSSAP00000048715	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	Vacuolar protein sorting-associated protein 52 homolog isoform X4.	0.649
LOC106599328	vps52	ENSSSAP00000039338	ENSSSAP00000112306	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	Vacuolar protein sorting-associated protein 52 homolog.	0.649
shh	LOC100286442	ENSSSAP00000084017	ENSSSAP00000048715	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	Vacuolar protein sorting-associated protein 52 homolog isoform X4.	0.649
shh	vps52	ENSSSAP00000084017	ENSSSAP00000112306	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	Vacuolar protein sorting-associated protein 52 homolog.	0.649
vps52	LOC106569233	ENSSSAP00000112306	ENSSSAP00000079095	Vacuolar protein sorting-associated protein 52 homolog.	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	0.649
vps52	LOC106578610	ENSSSAP00000112306	ENSSSAP00000067823	Vacuolar protein sorting-associated protein 52 homolog.	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	0.649
vps52	LOC106599328	ENSSSAP00000112306	ENSSSAP00000039338	Vacuolar protein sorting-associated protein 52 homolog.	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	0.649
vps52	shh	ENSSSAP00000112306	ENSSSAP00000084017	Vacuolar protein sorting-associated protein 52 homolog.	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	0.649