26 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PDGFRB-2	Platelet-derived growth factor receptor beta-like isoform X1; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1096 aa)
	LOC106588906	RNA-binding protein 24. (233 aa)
	LOC106587135	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (255 aa)
	ENSSSAP00000061457	annotation not available (128 aa)
	rbm24	RNA-binding protein 24. (232 aa)
	LOC106578610	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. (421 aa)
	ENSSSAP00000068411	annotation not available (456 aa)
	LOC106604460	Mediator of RNA polymerase II transcription subunit 12-like. (2151 aa)
	gata3	Transcription factor GATA-3 isoform X1. (441 aa)
	LOC106569233	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. (415 aa)
	LOC106606274	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (213 aa)
	shh	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. (421 aa)
	LOC106576696	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (257 aa)
	LOC106611503	Mediator of RNA polymerase II transcription subunit 12. (2069 aa)
	LOC106611231	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (776 aa)
	FGF3	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (237 aa)
	LOC106576211	Transcription factor GATA-3-like isoform X1. (455 aa)
	sec23a	Sec23 homolog A, coat complex II component. (770 aa)
	LOC106561973	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (255 aa)
	LOC106606043	RNA-binding protein 24-B-like. (128 aa)
	PDGFRB	Platelet-derived growth factor receptor beta; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1109 aa)
	LOC106611876	Platelet-derived growth factor receptor beta-like isoform X1; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1094 aa)
	fgf3	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (248 aa)
	ENSSSAP00000021569	annotation not available (128 aa)
	ENSSSAP00000022354	annotation not available (128 aa)
	LOC106599328	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. (415 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000068411	FGF3	ENSSSAP00000068411	ENSSSAP00000103555	annotation not available	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.456
ENSSSAP00000068411	LOC106561973	ENSSSAP00000068411	ENSSSAP00000115534	annotation not available	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.456
ENSSSAP00000068411	LOC106576696	ENSSSAP00000068411	ENSSSAP00000087712	annotation not available	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.519
ENSSSAP00000068411	LOC106587135	ENSSSAP00000068411	ENSSSAP00000054630	annotation not available	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.456
ENSSSAP00000068411	LOC106606274	ENSSSAP00000068411	ENSSSAP00000083733	annotation not available	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.519
ENSSSAP00000068411	fgf3	ENSSSAP00000068411	ENSSSAP00000012276	annotation not available	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.456
FGF3	ENSSSAP00000068411	ENSSSAP00000103555	ENSSSAP00000068411	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	annotation not available	0.456
FGF3	LOC106576696	ENSSSAP00000103555	ENSSSAP00000087712	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.703
FGF3	LOC106606274	ENSSSAP00000103555	ENSSSAP00000083733	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.703
FGF3	LOC106611876	ENSSSAP00000103555	ENSSSAP00000008112	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Platelet-derived growth factor receptor beta-like isoform X1; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.801
FGF3	PDGFRB	ENSSSAP00000103555	ENSSSAP00000006310	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Platelet-derived growth factor receptor beta; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.801
FGF3	PDGFRB-2	ENSSSAP00000103555	ENSSSAP00000045240	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Platelet-derived growth factor receptor beta-like isoform X1; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.801
LOC106561973	ENSSSAP00000068411	ENSSSAP00000115534	ENSSSAP00000068411	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	annotation not available	0.456
LOC106561973	LOC106576696	ENSSSAP00000115534	ENSSSAP00000087712	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.703
LOC106561973	LOC106606274	ENSSSAP00000115534	ENSSSAP00000083733	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.703
LOC106561973	LOC106611876	ENSSSAP00000115534	ENSSSAP00000008112	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Platelet-derived growth factor receptor beta-like isoform X1; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.801
LOC106561973	PDGFRB	ENSSSAP00000115534	ENSSSAP00000006310	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Platelet-derived growth factor receptor beta; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.801
LOC106561973	PDGFRB-2	ENSSSAP00000115534	ENSSSAP00000045240	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Platelet-derived growth factor receptor beta-like isoform X1; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.801
LOC106569233	LOC106576696	ENSSSAP00000079095	ENSSSAP00000087712	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.471
LOC106569233	LOC106606274	ENSSSAP00000079095	ENSSSAP00000083733	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.471