42 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CTNNA1	Catenin alpha-1. (876 aa)
	ENSSSAP00000051383	annotation not available (80 aa)
	LOC106600726	Growth/differentiation factor 6-A-like. (474 aa)
	ENSSSAP00000054832	Isoprenoid synthase domain-containing protein-like. (286 aa)
	ENSSSAP00000056455	annotation not available (204 aa)
	ENSSSAP00000058739	Bardet-Biedl syndrome 4 protein-like. (136 aa)
	LOC106613084	Neurofibromin-like isoform X5. (2779 aa)
	LOC106603288	Neurofibromin-like isoform X2. (2801 aa)
	fancc	Fanconi anemia group C protein isoform X1. (657 aa)
	LOC106560769	Bardet-Biedl syndrome 4 protein-like isoform X1. (526 aa)
	crppa	Isoprenoid synthase domain-containing protein isoform X2. (468 aa)
	BBS4	Bardet-Biedl syndrome 4 protein-like. (523 aa)
	ENSSSAP00000088306	Zinc finger protein 335-like. (955 aa)
	LOC106579553	Forkhead box protein H1-like isoform X2. (482 aa)
	LOC106560354	GS homeobox 2-like. (237 aa)
	ENSSSAP00000092101	Solute carrier family 6 member 4b. (662 aa)
	LOC106562972	Laminin subunit gamma-3-like. (1629 aa)
	slc6a4	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (646 aa)
	LOC106567758	Neurofibromin isoform X6. (2773 aa)
	LOC106568667	Laminin subunit gamma-3-like. (1654 aa)
	LOC106599430	Laminin subunit gamma-1-like. (1594 aa)
	LOC106590409	Forkhead box protein H1-like. (571 aa)
	fancd2	Fanconi anemia group D2 protein. (1490 aa)
	LOC106577307	Cytochrome P450 26A1-like; Belongs to the cytochrome P450 family. (516 aa)
	LOC106569067	Laminin subunit gamma-1-like. (1601 aa)
	LOC106580268	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (593 aa)
	LOC106566398	Zinc finger protein 335-like isoform X1. (1742 aa)
	LOC106612334	Catenin alpha-1-like. (82 aa)
	ENSSSAP00000032199	annotation not available (369 aa)
	ENSSSAP00000032074	annotation not available (804 aa)
	mkks	McKusick-Kaufman/Bardet-Biedl syndromes putative chaperonin. (583 aa)
	uchl5	Ubiquitin carboxyl-terminal hydrolase. (331 aa)
	LOC106584153	Ubiquitin carboxyl-terminal hydrolase. (356 aa)
	LOC106609760	Smoothened homolog. (529 aa)
	LOC106609934	Catenin alpha-2-like. (625 aa)
	ctnna2	Catenin alpha-2 isoform X2. (392 aa)
	gdf7	Growth/differentiation factor 7. (443 aa)
	CYP26A1	Cytochrome P450 26A1-like; Belongs to the cytochrome P450 family. (529 aa)
	LOC106612651	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (646 aa)
	Ctnna2	Catenin alpha 2. (618 aa)
	ENSSSAP00000007649	Catenin alpha-2-like. (365 aa)
	LOC106609776	Smoothened homolog; Belongs to the G-protein coupled receptor Fz/Smo family. (832 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BBS4	LOC106609760	ENSSSAP00000079394	ENSSSAP00000019830	Bardet-Biedl syndrome 4 protein-like.	Smoothened homolog.	0.608
BBS4	LOC106609776	ENSSSAP00000079394	ENSSSAP00000007393	Bardet-Biedl syndrome 4 protein-like.	Smoothened homolog; Belongs to the G-protein coupled receptor Fz/Smo family.	0.608
CTNNA1	Ctnna2	ENSSSAP00000045783	ENSSSAP00000008899	Catenin alpha-1.	Catenin alpha 2.	0.901
CTNNA1	ENSSSAP00000007649	ENSSSAP00000045783	ENSSSAP00000007649	Catenin alpha-1.	Catenin alpha-2-like.	0.901
Ctnna2	CTNNA1	ENSSSAP00000008899	ENSSSAP00000045783	Catenin alpha 2.	Catenin alpha-1.	0.901
Ctnna2	ENSSSAP00000007649	ENSSSAP00000008899	ENSSSAP00000007649	Catenin alpha 2.	Catenin alpha-2-like.	0.900
ENSSSAP00000007649	CTNNA1	ENSSSAP00000007649	ENSSSAP00000045783	Catenin alpha-2-like.	Catenin alpha-1.	0.901
ENSSSAP00000007649	Ctnna2	ENSSSAP00000007649	ENSSSAP00000008899	Catenin alpha-2-like.	Catenin alpha 2.	0.900
ENSSSAP00000056455	ENSSSAP00000058739	ENSSSAP00000056455	ENSSSAP00000058739	annotation not available	Bardet-Biedl syndrome 4 protein-like.	0.412
ENSSSAP00000056455	LOC106609760	ENSSSAP00000056455	ENSSSAP00000019830	annotation not available	Smoothened homolog.	0.608
ENSSSAP00000056455	LOC106609776	ENSSSAP00000056455	ENSSSAP00000007393	annotation not available	Smoothened homolog; Belongs to the G-protein coupled receptor Fz/Smo family.	0.608
ENSSSAP00000058739	ENSSSAP00000056455	ENSSSAP00000058739	ENSSSAP00000056455	Bardet-Biedl syndrome 4 protein-like.	annotation not available	0.412
ENSSSAP00000058739	LOC106609760	ENSSSAP00000058739	ENSSSAP00000019830	Bardet-Biedl syndrome 4 protein-like.	Smoothened homolog.	0.608
ENSSSAP00000058739	LOC106609776	ENSSSAP00000058739	ENSSSAP00000007393	Bardet-Biedl syndrome 4 protein-like.	Smoothened homolog; Belongs to the G-protein coupled receptor Fz/Smo family.	0.608
LOC106560769	LOC106609760	ENSSSAP00000072655	ENSSSAP00000019830	Bardet-Biedl syndrome 4 protein-like isoform X1.	Smoothened homolog.	0.608
LOC106560769	LOC106609776	ENSSSAP00000072655	ENSSSAP00000007393	Bardet-Biedl syndrome 4 protein-like isoform X1.	Smoothened homolog; Belongs to the G-protein coupled receptor Fz/Smo family.	0.608
LOC106603288	LOC106613084	ENSSSAP00000063392	ENSSSAP00000062149	Neurofibromin-like isoform X2.	Neurofibromin-like isoform X5.	0.900
LOC106609760	BBS4	ENSSSAP00000019830	ENSSSAP00000079394	Smoothened homolog.	Bardet-Biedl syndrome 4 protein-like.	0.608
LOC106609760	ENSSSAP00000056455	ENSSSAP00000019830	ENSSSAP00000056455	Smoothened homolog.	annotation not available	0.608
LOC106609760	ENSSSAP00000058739	ENSSSAP00000019830	ENSSSAP00000058739	Smoothened homolog.	Bardet-Biedl syndrome 4 protein-like.	0.608