(36 nodes) Nuclear androgen receptor binding network (Salmo salar)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSSAP00000000384	annotation not available (35 aa)
	ENSSSAP00000000399	annotation not available (246 aa)
	PRPF6	pre-mRNA processing factor 6. (598 aa)
	LOC106608924	Histone acetyltransferase p300-like isoform X2. (2752 aa)
	xpp3	Histone acetyltransferase p300-like isoform X8. (2344 aa)
	LOC106610674	Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family. (828 aa)
	kpca	Protein kinase C beta type-like. (677 aa)
	LOC106562352	Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family. (866 aa)
	ENSSSAP00000018633	annotation not available (35 aa)
	ENSSSAP00000020244	annotation not available (65 aa)
	LOC106589530	CREB-binding protein-like isoform X4. (2921 aa)
	LOC106568016	Histone-lysine N-methyltransferase NSD3-like isoform X2. (2103 aa)
	LOC106579512	E3 ubiquitin-protein ligase RNF6-like. (721 aa)
	prpf6	pre-mRNA-processing factor 6. (1006 aa)
	LOC106595901	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (243 aa)
	LOC106569963	Death domain-associated protein 6-like. (746 aa)
	LOC106584348	RBR-type E3 ubiquitin transferase. (818 aa)
	LOC106606709	Protein kinase C alpha type-like. (127 aa)
	LOC106606719	Protein kinase C alpha type-like; Belongs to the protein kinase superfamily. (476 aa)
	snw1	LOW QUALITY PROTEIN: SNW domain-containing protein 1. (436 aa)
	SNW1	SNW domain-containing protein 1-like. (537 aa)
	LOC106592127	Protein kinase C alpha type-like. (308 aa)
	LOC106612244	Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific-like. (602 aa)
	LOC106590444	E3 ubiquitin-protein ligase RNF6-like. (719 aa)
	LOC106594733	Non-specific serine/threonine protein kinase. (273 aa)
	ENSSSAP00000067973	TATA element modulatory factor 1. (1065 aa)
	LOC106594070	Protein kinase C alpha type-like. (185 aa)
	LOC106603477	Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific-like isoform X1. (2157 aa)
	PRKCA	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (677 aa)
	LOC106607167	Histone acetyltransferase p300-like isoform X9. (2695 aa)
	LOC106579832	AT-rich interactive domain-containing protein 5A-like isoform X1. (609 aa)
	LOC106585613	AT-rich interactive domain-containing protein 5A-like isoform X1. (603 aa)
	LOC106588403	Death domain-associated protein 6-like isoform X1. (769 aa)
	rnf14	RBR-type E3 ubiquitin transferase. (466 aa)
	RNF14	Ring finger protein 14. (450 aa)
	tmf1	TATA element modulatory factor isoform X1. (1170 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106562352	LOC106589530	ENSSSAP00000018063	ENSSSAP00000020738	Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family.	CREB-binding protein-like isoform X4.	0.676
LOC106562352	LOC106607167	ENSSSAP00000018063	ENSSSAP00000081005	Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family.	Histone acetyltransferase p300-like isoform X9.	0.676
LOC106562352	LOC106608924	ENSSSAP00000018063	ENSSSAP00000003652	Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family.	Histone acetyltransferase p300-like isoform X2.	0.676
LOC106562352	xpp3	ENSSSAP00000018063	ENSSSAP00000005298	Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family.	Histone acetyltransferase p300-like isoform X8.	0.676
LOC106568016	LOC106589530	ENSSSAP00000023462	ENSSSAP00000020738	Histone-lysine N-methyltransferase NSD3-like isoform X2.	CREB-binding protein-like isoform X4.	0.474
LOC106568016	LOC106607167	ENSSSAP00000023462	ENSSSAP00000081005	Histone-lysine N-methyltransferase NSD3-like isoform X2.	Histone acetyltransferase p300-like isoform X9.	0.474
LOC106568016	LOC106608924	ENSSSAP00000023462	ENSSSAP00000003652	Histone-lysine N-methyltransferase NSD3-like isoform X2.	Histone acetyltransferase p300-like isoform X2.	0.474
LOC106568016	xpp3	ENSSSAP00000023462	ENSSSAP00000005298	Histone-lysine N-methyltransferase NSD3-like isoform X2.	Histone acetyltransferase p300-like isoform X8.	0.474
LOC106589530	LOC106562352	ENSSSAP00000020738	ENSSSAP00000018063	CREB-binding protein-like isoform X4.	Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family.	0.676
LOC106589530	LOC106568016	ENSSSAP00000020738	ENSSSAP00000023462	CREB-binding protein-like isoform X4.	Histone-lysine N-methyltransferase NSD3-like isoform X2.	0.474
LOC106589530	LOC106603477	ENSSSAP00000020738	ENSSSAP00000068847	CREB-binding protein-like isoform X4.	Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific-like isoform X1.	0.474
LOC106589530	LOC106607167	ENSSSAP00000020738	ENSSSAP00000081005	CREB-binding protein-like isoform X4.	Histone acetyltransferase p300-like isoform X9.	0.901
LOC106589530	LOC106610674	ENSSSAP00000020738	ENSSSAP00000005587	CREB-binding protein-like isoform X4.	Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family.	0.676
LOC106589530	LOC106612244	ENSSSAP00000020738	ENSSSAP00000057306	CREB-binding protein-like isoform X4.	Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific-like.	0.474
LOC106589530	SNW1	ENSSSAP00000020738	ENSSSAP00000043847	CREB-binding protein-like isoform X4.	SNW domain-containing protein 1-like.	0.713
LOC106589530	snw1	ENSSSAP00000020738	ENSSSAP00000041117	CREB-binding protein-like isoform X4.	LOW QUALITY PROTEIN: SNW domain-containing protein 1.	0.713
LOC106589530	xpp3	ENSSSAP00000020738	ENSSSAP00000005298	CREB-binding protein-like isoform X4.	Histone acetyltransferase p300-like isoform X8.	0.901
LOC106595901	PRKCA	ENSSSAP00000028982	ENSSSAP00000071520	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.900
LOC106603477	LOC106589530	ENSSSAP00000068847	ENSSSAP00000020738	Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific-like isoform X1.	CREB-binding protein-like isoform X4.	0.474
LOC106603477	LOC106607167	ENSSSAP00000068847	ENSSSAP00000081005	Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific-like isoform X1.	Histone acetyltransferase p300-like isoform X9.	0.474