23 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	jgn1a	Jagunal homolog 1-A. (253 aa)
	LOC106611935	Spondin-2-like. (330 aa)
	bcl10	B-cell lymphoma/leukemia 10. (226 aa)
	cotl1	Coactosin-like protein. (142 aa)
	LOC106566621	Interleukin-17 receptor C-like isoform X1. (747 aa)
	ENSSSAP00000015991	Jagunal homolog 1a. (149 aa)
	fam3a	Protein FAM3A isoform X1. (229 aa)
	LOC106610232	B-cell lymphoma/leukemia 10-like. (232 aa)
	LOC106574602	Protein jagunal homolog 1-B-like. (159 aa)
	LOC106604923	Spondin-2-like. (330 aa)
	LOC106600420	B-cell lymphoma/leukemia 10-like. (267 aa)
	cotl1-2	Salmo salar coactosin-like 1 (Dictyostelium) (cotl1), mRNA. (142 aa)
	LOC106586704	Protein jagunal homolog 1-A-like isoform X1. (204 aa)
	LOC106574769	Protein jagunal homolog 1-B. (183 aa)
	LOC106585631	Caspase recruitment domain-containing protein 9-like isoform X1. (548 aa)
	LOC106574662	Protein jagunal homolog 1-B-like. (178 aa)
	ENSSSAP00000067924	Spondin 2b, extracellular matrix protein. (271 aa)
	spon2	Spondin-2 precursor. (422 aa)
	card9	Caspase recruitment domain-containing protein 9. (531 aa)
	LOC106569306	B-cell lymphoma/leukemia 10-like. (262 aa)
	LOC106561657	Interleukin-17 receptor A-like. (574 aa)
	ENSSSAP00000106597	annotation not available (232 aa)
	ENSSSAP00000106607	annotation not available (232 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000106597	LOC106585631	ENSSSAP00000106597	ENSSSAP00000055676	annotation not available	Caspase recruitment domain-containing protein 9-like isoform X1.	0.827
ENSSSAP00000106597	card9	ENSSSAP00000106597	ENSSSAP00000073543	annotation not available	Caspase recruitment domain-containing protein 9.	0.827
ENSSSAP00000106607	LOC106585631	ENSSSAP00000106607	ENSSSAP00000055676	annotation not available	Caspase recruitment domain-containing protein 9-like isoform X1.	0.827
ENSSSAP00000106607	card9	ENSSSAP00000106607	ENSSSAP00000073543	annotation not available	Caspase recruitment domain-containing protein 9.	0.827
LOC106561657	LOC106566621	ENSSSAP00000114473	ENSSSAP00000014676	Interleukin-17 receptor A-like.	Interleukin-17 receptor C-like isoform X1.	0.983
LOC106566621	LOC106561657	ENSSSAP00000014676	ENSSSAP00000114473	Interleukin-17 receptor C-like isoform X1.	Interleukin-17 receptor A-like.	0.983
LOC106569306	LOC106585631	ENSSSAP00000098007	ENSSSAP00000055676	B-cell lymphoma/leukemia 10-like.	Caspase recruitment domain-containing protein 9-like isoform X1.	0.994
LOC106569306	card9	ENSSSAP00000098007	ENSSSAP00000073543	B-cell lymphoma/leukemia 10-like.	Caspase recruitment domain-containing protein 9.	0.994
LOC106585631	ENSSSAP00000106597	ENSSSAP00000055676	ENSSSAP00000106597	Caspase recruitment domain-containing protein 9-like isoform X1.	annotation not available	0.827
LOC106585631	ENSSSAP00000106607	ENSSSAP00000055676	ENSSSAP00000106607	Caspase recruitment domain-containing protein 9-like isoform X1.	annotation not available	0.827
LOC106585631	LOC106569306	ENSSSAP00000055676	ENSSSAP00000098007	Caspase recruitment domain-containing protein 9-like isoform X1.	B-cell lymphoma/leukemia 10-like.	0.994
LOC106585631	LOC106600420	ENSSSAP00000055676	ENSSSAP00000038535	Caspase recruitment domain-containing protein 9-like isoform X1.	B-cell lymphoma/leukemia 10-like.	0.994
LOC106585631	LOC106610232	ENSSSAP00000055676	ENSSSAP00000022092	Caspase recruitment domain-containing protein 9-like isoform X1.	B-cell lymphoma/leukemia 10-like.	0.982
LOC106585631	bcl10	ENSSSAP00000055676	ENSSSAP00000007884	Caspase recruitment domain-containing protein 9-like isoform X1.	B-cell lymphoma/leukemia 10.	0.987
LOC106585631	card9	ENSSSAP00000055676	ENSSSAP00000073543	Caspase recruitment domain-containing protein 9-like isoform X1.	Caspase recruitment domain-containing protein 9.	0.901
LOC106600420	LOC106585631	ENSSSAP00000038535	ENSSSAP00000055676	B-cell lymphoma/leukemia 10-like.	Caspase recruitment domain-containing protein 9-like isoform X1.	0.994
LOC106600420	card9	ENSSSAP00000038535	ENSSSAP00000073543	B-cell lymphoma/leukemia 10-like.	Caspase recruitment domain-containing protein 9.	0.994
LOC106610232	LOC106585631	ENSSSAP00000022092	ENSSSAP00000055676	B-cell lymphoma/leukemia 10-like.	Caspase recruitment domain-containing protein 9-like isoform X1.	0.982
LOC106610232	card9	ENSSSAP00000022092	ENSSSAP00000073543	B-cell lymphoma/leukemia 10-like.	Caspase recruitment domain-containing protein 9.	0.982
bcl10	LOC106585631	ENSSSAP00000007884	ENSSSAP00000055676	B-cell lymphoma/leukemia 10.	Caspase recruitment domain-containing protein 9-like isoform X1.	0.987