8 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106612627	Bifunctional polynucleotide phosphatase/kinase-like. (619 aa)
	ENSSSAP00000115415	annotation not available (257 aa)
	LOC106585761	DNA repair protein XRCC4-like isoform X1. (317 aa)
	xrcc4	DNA repair protein XRCC4 isoform X2. (336 aa)
	lig3	DNA ligase. (1023 aa)
	ENSSSAP00000048205	annotation not available (73 aa)
	ENSSSAP00000030774	annotation not available (144 aa)
	lig4	DNA ligase. (927 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000030774	ENSSSAP00000048205	ENSSSAP00000030774	ENSSSAP00000048205	annotation not available	annotation not available	0.822
ENSSSAP00000030774	ENSSSAP00000115415	ENSSSAP00000030774	ENSSSAP00000115415	annotation not available	annotation not available	0.400
ENSSSAP00000030774	LOC106585761	ENSSSAP00000030774	ENSSSAP00000096106	annotation not available	DNA repair protein XRCC4-like isoform X1.	0.993
ENSSSAP00000030774	LOC106612627	ENSSSAP00000030774	ENSSSAP00000033738	annotation not available	Bifunctional polynucleotide phosphatase/kinase-like.	0.822
ENSSSAP00000030774	lig3	ENSSSAP00000030774	ENSSSAP00000058163	annotation not available	DNA ligase.	0.400
ENSSSAP00000030774	xrcc4	ENSSSAP00000030774	ENSSSAP00000059144	annotation not available	DNA repair protein XRCC4 isoform X2.	0.895
ENSSSAP00000048205	ENSSSAP00000030774	ENSSSAP00000048205	ENSSSAP00000030774	annotation not available	annotation not available	0.822
ENSSSAP00000048205	ENSSSAP00000115415	ENSSSAP00000048205	ENSSSAP00000115415	annotation not available	annotation not available	0.927
ENSSSAP00000048205	LOC106585761	ENSSSAP00000048205	ENSSSAP00000096106	annotation not available	DNA repair protein XRCC4-like isoform X1.	0.844
ENSSSAP00000048205	lig3	ENSSSAP00000048205	ENSSSAP00000058163	annotation not available	DNA ligase.	0.927
ENSSSAP00000048205	lig4	ENSSSAP00000048205	ENSSSAP00000029249	annotation not available	DNA ligase.	0.822
ENSSSAP00000115415	ENSSSAP00000030774	ENSSSAP00000115415	ENSSSAP00000030774	annotation not available	annotation not available	0.400
ENSSSAP00000115415	ENSSSAP00000048205	ENSSSAP00000115415	ENSSSAP00000048205	annotation not available	annotation not available	0.927
ENSSSAP00000115415	LOC106585761	ENSSSAP00000115415	ENSSSAP00000096106	annotation not available	DNA repair protein XRCC4-like isoform X1.	0.953
ENSSSAP00000115415	LOC106612627	ENSSSAP00000115415	ENSSSAP00000033738	annotation not available	Bifunctional polynucleotide phosphatase/kinase-like.	0.927
ENSSSAP00000115415	lig4	ENSSSAP00000115415	ENSSSAP00000029249	annotation not available	DNA ligase.	0.400
ENSSSAP00000115415	xrcc4	ENSSSAP00000115415	ENSSSAP00000059144	annotation not available	DNA repair protein XRCC4 isoform X2.	0.622
LOC106585761	ENSSSAP00000030774	ENSSSAP00000096106	ENSSSAP00000030774	DNA repair protein XRCC4-like isoform X1.	annotation not available	0.993
LOC106585761	ENSSSAP00000048205	ENSSSAP00000096106	ENSSSAP00000048205	DNA repair protein XRCC4-like isoform X1.	annotation not available	0.844
LOC106585761	ENSSSAP00000115415	ENSSSAP00000096106	ENSSSAP00000115415	DNA repair protein XRCC4-like isoform X1.	annotation not available	0.953