6 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106566345	methyl-CpG-binding protein 2-like. (680 aa)
	LOC106570815	Interleukin-1. (263 aa)
	LOC106572920	methyl-CpG-binding protein 2-like isoform X1. (668 aa)
	LOC100136449	Interleukin-1. (260 aa)
	vegfc	Vascular endothelial growth factor C precursor; Belongs to the PDGF/VEGF growth factor family. (409 aa)
	LOC106610161	Vascular endothelial growth factor C-like isoform X1; Belongs to the PDGF/VEGF growth factor family. (407 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100136449	LOC106566345	ENSSSAP00000047024	ENSSSAP00000061807	Interleukin-1.	methyl-CpG-binding protein 2-like.	0.575
LOC100136449	LOC106570815	ENSSSAP00000047024	ENSSSAP00000042105	Interleukin-1.	Interleukin-1.	0.901
LOC100136449	LOC106572920	ENSSSAP00000047024	ENSSSAP00000044090	Interleukin-1.	methyl-CpG-binding protein 2-like isoform X1.	0.575
LOC100136449	LOC106610161	ENSSSAP00000047024	ENSSSAP00000072179	Interleukin-1.	Vascular endothelial growth factor C-like isoform X1; Belongs to the PDGF/VEGF growth factor family.	0.526
LOC100136449	vegfc	ENSSSAP00000047024	ENSSSAP00000060669	Interleukin-1.	Vascular endothelial growth factor C precursor; Belongs to the PDGF/VEGF growth factor family.	0.526
LOC106566345	LOC100136449	ENSSSAP00000061807	ENSSSAP00000047024	methyl-CpG-binding protein 2-like.	Interleukin-1.	0.575
LOC106566345	LOC106570815	ENSSSAP00000061807	ENSSSAP00000042105	methyl-CpG-binding protein 2-like.	Interleukin-1.	0.575
LOC106570815	LOC100136449	ENSSSAP00000042105	ENSSSAP00000047024	Interleukin-1.	Interleukin-1.	0.901
LOC106570815	LOC106566345	ENSSSAP00000042105	ENSSSAP00000061807	Interleukin-1.	methyl-CpG-binding protein 2-like.	0.575
LOC106570815	LOC106572920	ENSSSAP00000042105	ENSSSAP00000044090	Interleukin-1.	methyl-CpG-binding protein 2-like isoform X1.	0.575
LOC106570815	LOC106610161	ENSSSAP00000042105	ENSSSAP00000072179	Interleukin-1.	Vascular endothelial growth factor C-like isoform X1; Belongs to the PDGF/VEGF growth factor family.	0.526
LOC106570815	vegfc	ENSSSAP00000042105	ENSSSAP00000060669	Interleukin-1.	Vascular endothelial growth factor C precursor; Belongs to the PDGF/VEGF growth factor family.	0.526
LOC106572920	LOC100136449	ENSSSAP00000044090	ENSSSAP00000047024	methyl-CpG-binding protein 2-like isoform X1.	Interleukin-1.	0.575
LOC106572920	LOC106570815	ENSSSAP00000044090	ENSSSAP00000042105	methyl-CpG-binding protein 2-like isoform X1.	Interleukin-1.	0.575
LOC106610161	LOC100136449	ENSSSAP00000072179	ENSSSAP00000047024	Vascular endothelial growth factor C-like isoform X1; Belongs to the PDGF/VEGF growth factor family.	Interleukin-1.	0.526
LOC106610161	LOC106570815	ENSSSAP00000072179	ENSSSAP00000042105	Vascular endothelial growth factor C-like isoform X1; Belongs to the PDGF/VEGF growth factor family.	Interleukin-1.	0.526
vegfc	LOC100136449	ENSSSAP00000060669	ENSSSAP00000047024	Vascular endothelial growth factor C precursor; Belongs to the PDGF/VEGF growth factor family.	Interleukin-1.	0.526
vegfc	LOC106570815	ENSSSAP00000060669	ENSSSAP00000042105	Vascular endothelial growth factor C precursor; Belongs to the PDGF/VEGF growth factor family.	Interleukin-1.	0.526