32 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106611819	Fibroblast growth factor 18-like isoform X1; Belongs to the heparin-binding growth factors family. (209 aa)
	LOC106603257	Fibroblast growth factor 18-like; Belongs to the heparin-binding growth factors family. (214 aa)
	LOC106611121	Bone morphogenetic protein 4-like. (407 aa)
	cef10	CEF-10 precursor. (413 aa)
	LOC106584620	Transcription factor SOX5/6/13 (SOX group D). (835 aa)
	bmpr2	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (444 aa)
	LOC106587109	Pleiotrophic factor-alpha-2. (147 aa)
	sox6	Transcription factor SOX-6. (817 aa)
	LOC106609328	Transcription factor SOX-5-like isoform X3. (793 aa)
	LOC106608828	Extracellular tyrosine-protein kinase PKDCC-like isoform X1. (482 aa)
	LOC106604596	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (210 aa)
	LOC106568178	Bone morphogenetic protein 10-like isoform X2. (472 aa)
	LOC106604538	Transmembrane anterior posterior transformation protein 1 homolog isoform X2. (589 aa)
	pkdcc	Extracellular tyrosine-protein kinase PKDCC. (545 aa)
	LOC106610624	Extracellular tyrosine-protein kinase PKDCC-like. (485 aa)
	ENSSSAP00000035947	Extracellular tyrosine-protein kinase PKDCC&#160. (527 aa)
	ENSSSAP00000038630	annotation not available (351 aa)
	LOC106576150	Transcription factor SOX-5-like isoform X3. (780 aa)
	LOC106611550	Transmembrane anterior posterior transformation protein 1 homolog isoform X1. (603 aa)
	Sox6	Transcription factor SOX5/6/13 (SOX group D). (244 aa)
	LOC106612383	Bone morphogenetic protein 2-like isoform X1. (491 aa)
	cyr61	Protein CYR61. (413 aa)
	bmp4	Bone morphogenetic protein 4 precursor. (407 aa)
	LOC106594345	Bone morphogenetic protein receptor type-2-like. (698 aa)
	LOC106561060	Transcription factor SOX-6-like isoform X1. (784 aa)
	LOC106593270	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (632 aa)
	ENSSSAP00000108020	Fibroblast growth factor 18b. (188 aa)
	LOC106580552	Bone morphogenetic protein 10-like. (509 aa)
	LOC106561948	Pleiotrophic factor-alpha-2. (147 aa)
	LOC106585109	Bone morphogenetic protein 10-like. (497 aa)
	LOC106563975	Bone morphogenetic protein 10-like. (475 aa)
	LOC106604790	Fibroblast growth factor 18-like isoform X4; Belongs to the heparin-binding growth factors family. (209 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106561060	LOC106576150	ENSSSAP00000065795	ENSSSAP00000042396	Transcription factor SOX-6-like isoform X1.	Transcription factor SOX-5-like isoform X3.	0.649
LOC106561060	LOC106609328	ENSSSAP00000065795	ENSSSAP00000094355	Transcription factor SOX-6-like isoform X1.	Transcription factor SOX-5-like isoform X3.	0.648
LOC106563975	LOC106593270	ENSSSAP00000001273	ENSSSAP00000068558	Bone morphogenetic protein 10-like.	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.721
LOC106563975	LOC106594345	ENSSSAP00000001273	ENSSSAP00000056436	Bone morphogenetic protein 10-like.	Bone morphogenetic protein receptor type-2-like.	0.970
LOC106563975	bmpr2	ENSSSAP00000001273	ENSSSAP00000022094	Bone morphogenetic protein 10-like.	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.721
LOC106568178	LOC106593270	ENSSSAP00000071061	ENSSSAP00000068558	Bone morphogenetic protein 10-like isoform X2.	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.721
LOC106568178	LOC106594345	ENSSSAP00000071061	ENSSSAP00000056436	Bone morphogenetic protein 10-like isoform X2.	Bone morphogenetic protein receptor type-2-like.	0.970
LOC106568178	bmpr2	ENSSSAP00000071061	ENSSSAP00000022094	Bone morphogenetic protein 10-like isoform X2.	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.721
LOC106576150	LOC106561060	ENSSSAP00000042396	ENSSSAP00000065795	Transcription factor SOX-5-like isoform X3.	Transcription factor SOX-6-like isoform X1.	0.649
LOC106576150	LOC106584620	ENSSSAP00000042396	ENSSSAP00000019107	Transcription factor SOX-5-like isoform X3.	Transcription factor SOX5/6/13 (SOX group D).	0.652
LOC106576150	Sox6	ENSSSAP00000042396	ENSSSAP00000050176	Transcription factor SOX-5-like isoform X3.	Transcription factor SOX5/6/13 (SOX group D).	0.640
LOC106576150	sox6	ENSSSAP00000042396	ENSSSAP00000083737	Transcription factor SOX-5-like isoform X3.	Transcription factor SOX-6.	0.646
LOC106580552	LOC106593270	ENSSSAP00000109486	ENSSSAP00000068558	Bone morphogenetic protein 10-like.	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.721
LOC106580552	LOC106594345	ENSSSAP00000109486	ENSSSAP00000056436	Bone morphogenetic protein 10-like.	Bone morphogenetic protein receptor type-2-like.	0.970
LOC106580552	bmpr2	ENSSSAP00000109486	ENSSSAP00000022094	Bone morphogenetic protein 10-like.	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.721
LOC106584620	LOC106576150	ENSSSAP00000019107	ENSSSAP00000042396	Transcription factor SOX5/6/13 (SOX group D).	Transcription factor SOX-5-like isoform X3.	0.652
LOC106584620	LOC106609328	ENSSSAP00000019107	ENSSSAP00000094355	Transcription factor SOX5/6/13 (SOX group D).	Transcription factor SOX-5-like isoform X3.	0.651
LOC106585109	LOC106593270	ENSSSAP00000116662	ENSSSAP00000068558	Bone morphogenetic protein 10-like.	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.721
LOC106585109	LOC106594345	ENSSSAP00000116662	ENSSSAP00000056436	Bone morphogenetic protein 10-like.	Bone morphogenetic protein receptor type-2-like.	0.970
LOC106585109	bmpr2	ENSSSAP00000116662	ENSSSAP00000022094	Bone morphogenetic protein 10-like.	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.721