18 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SIX3	Homeobox protein SIX3-like. (294 aa)
	DIO2	Iodothyronine deiodinase 2. (268 aa)
	ccnd1	G1/S-specific cyclin-D1; Belongs to the cyclin family. (292 aa)
	six3	Homeobox protein SIX3. (294 aa)
	LOC106574030	Diencephalon/mesencephalon homeobox protein 1-B-like. (400 aa)
	LOC106608888	Homeobox protein SIX6-like isoform X1. (266 aa)
	LOC106587137	G1/S-specific cyclin-D1; Belongs to the cyclin family. (339 aa)
	LOC106577861	Homeobox protein SIX6-like isoform X1. (266 aa)
	LOC106604975	Protein atonal homolog 8-like. (291 aa)
	atoh8	Protein atonal homolog 8. (228 aa)
	LOC106603085	Iodothyronine deiodinase; Responsible for the deiodination of T4 (3,5,3',5'- tetraiodothyronine). (264 aa)
	LOC106578932	Homeobox protein SIX3-like isoform X1. (265 aa)
	LOC106568973	Diencephalon/mesencephalon homeobox protein 1-A-like. (380 aa)
	LOC106562055	G1/S-specific cyclin-D1-like; Belongs to the cyclin family. (339 aa)
	LOC106598935	Diencephalon/mesencephalon homeobox protein 1-A-like. (460 aa)
	dio1	Iodothyronine deiodinase; Responsible for the deiodination of T4 (3,5,3',5'- tetraiodothyronine). (249 aa)
	LOC106613550	Diencephalon/mesencephalon homeobox protein 1-B-like. (396 aa)
	CCND1	G1/S-specific cyclin-D1-like; Belongs to the cyclin family. (291 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCND1	ccnd1	ENSSSAP00000103569	ENSSSAP00000012233	G1/S-specific cyclin-D1-like; Belongs to the cyclin family.	G1/S-specific cyclin-D1; Belongs to the cyclin family.	0.900
DIO2	dio1	ENSSSAP00000006097	ENSSSAP00000102049	Iodothyronine deiodinase 2.	Iodothyronine deiodinase; Responsible for the deiodination of T4 (3,5,3',5'- tetraiodothyronine).	0.879
LOC106603085	dio1	ENSSSAP00000073910	ENSSSAP00000102049	Iodothyronine deiodinase; Responsible for the deiodination of T4 (3,5,3',5'- tetraiodothyronine).	Iodothyronine deiodinase; Responsible for the deiodination of T4 (3,5,3',5'- tetraiodothyronine).	0.879
ccnd1	CCND1	ENSSSAP00000012233	ENSSSAP00000103569	G1/S-specific cyclin-D1; Belongs to the cyclin family.	G1/S-specific cyclin-D1-like; Belongs to the cyclin family.	0.900
dio1	DIO2	ENSSSAP00000102049	ENSSSAP00000006097	Iodothyronine deiodinase; Responsible for the deiodination of T4 (3,5,3',5'- tetraiodothyronine).	Iodothyronine deiodinase 2.	0.879
dio1	LOC106603085	ENSSSAP00000102049	ENSSSAP00000073910	Iodothyronine deiodinase; Responsible for the deiodination of T4 (3,5,3',5'- tetraiodothyronine).	Iodothyronine deiodinase; Responsible for the deiodination of T4 (3,5,3',5'- tetraiodothyronine).	0.879