STRINGSTRING
LOC100380868 LOC100380868 YTHDF1 YTHDF1 LOC106602922 LOC106602922 LOC106605192 LOC106605192 LOC106610663 LOC106610663 LOC106611270 LOC106611270 LOC106593600 LOC106593600 LOC106606043 LOC106606043 LOC106599087 LOC106599087 ENSSSAP00000008190 ENSSSAP00000008190 LOC106597766 LOC106597766 cnot3 cnot3 ENSSSAP00000010089 ENSSSAP00000010089 dis3l2 dis3l2 ENSSSAP00000010521 ENSSSAP00000010521 LOC106611868 LOC106611868 tisb tisb LOC106603492 LOC106603492 LOC106612716 LOC106612716 LOC106560998 LOC106560998 LOC106608164 LOC106608164 tgfi1 tgfi1 exosc8 exosc8 LOC106573951 LOC106573951 LOC106560907 LOC106560907 pan3 pan3 zc3h12a zc3h12a EXOS9 EXOS9 LOC106597592 LOC106597592 LOC106584061 LOC106584061 ENSSSAP00000021569 ENSSSAP00000021569 ENSSSAP00000021711 ENSSSAP00000021711 LOC106610612 LOC106610612 ENSSSAP00000022354 ENSSSAP00000022354 ENSSSAP00000022531 ENSSSAP00000022531 LOC106597766-2 LOC106597766-2 ENSSSAP00000022583 ENSSSAP00000022583 LOC106596192 LOC106596192 ENSSSAP00000022746 ENSSSAP00000022746 LOC106596388 LOC106596388 PNPT1 PNPT1 LOC106568378 LOC106568378 pde12 pde12 LOC106595781 LOC106595781 LOC106568923 LOC106568923 LOC106590917 LOC106590917 ENSSSAP00000034844 ENSSSAP00000034844 ENSSSAP00000034985 ENSSSAP00000034985 LOC106571976 LOC106571976 LOC106609972 LOC106609972 LOC106613585 LOC106613585 pan2 pan2 exosc3 exosc3 LOC106566956 LOC106566956 LOC106580729 LOC106580729 LOC106560426 LOC106560426 LOC106583205 LOC106583205 LOC106588906 LOC106588906 YTHDF1-2 YTHDF1-2 ENSSSAP00000049389 ENSSSAP00000049389 CNOT3 CNOT3 LOC106561687 LOC106561687 LSM1 LSM1 ENSSSAP00000050742 ENSSSAP00000050742 LOC106579538 LOC106579538 LOC106597194 LOC106597194 LOC106595781-2 LOC106595781-2 LOC106604834 LOC106604834 LOC106605151 LOC106605151 LOC106561350 LOC106561350 exos2 exos2 fto fto LOC106582737 LOC106582737 mettl14 mettl14 LOC106588450 LOC106588450 LOC106567220 LOC106567220 ENSSSAP00000061457 ENSSSAP00000061457 LOC106590438 LOC106590438 exosc9 exosc9 LOC106570475 LOC106570475 exosc5 exosc5 rbm24 rbm24 cnot8 cnot8 ENSSSAP00000066332 ENSSSAP00000066332 ENSSSAP00000067326 ENSSSAP00000067326 LOC106590454 LOC106590454 ENSSSAP00000069793 ENSSSAP00000069793 LOC106585979 LOC106585979 LOC106611287 LOC106611287 dcps dcps LOC106602767 LOC106602767 LOC106604687 LOC106604687 LOC106602420 LOC106602420 LOC106581162 LOC106581162 cnot6 cnot6 LOC106589020 LOC106589020 mettl3 mettl3 LOC106585172 LOC106585172 cnot2 cnot2 ENSSSAP00000080004 ENSSSAP00000080004 ENSSSAP00000080632 ENSSSAP00000080632 dhx36 dhx36 LOC106613034 LOC106613034 LOC106567372 LOC106567372 LOC106572136 LOC106572136 dcp2 dcp2 ENSSSAP00000087416 ENSSSAP00000087416 mov10 mov10 LOC106605117 LOC106605117 hrsp12 hrsp12 LOC106569767 LOC106569767 LOC106572457 LOC106572457 LOC106585873 LOC106585873 LOC106582818 LOC106582818 i2c3 i2c3 LOC106570868 LOC106570868 PNPT1-2 PNPT1-2 LOC106580576 LOC106580576 zfp36l1 zfp36l1 LOC106602955 LOC106602955 mettl16 mettl16 LOC106612892 LOC106612892 LOC106587580 LOC106587580 LOC106602708 LOC106602708 exosc7 exosc7 LOC106580723 LOC106580723 mlh1 mlh1 rpb4 rpb4
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC100380868Terminal uridylyltransferase 7. (897 aa)
YTHDF1YTH domain-containing family protein 1-like isoform X2. (788 aa)
LOC106602922CCR4-NOT transcription complex subunit 6-like. (560 aa)
LOC106605192Zinc finger protein 36, C3H1 type-like 2-A. (429 aa)
LOC106610663YTH domain-containing family protein 2-like. (625 aa)
LOC106611270Endoribonuclease Dicer-like; Belongs to the helicase family. Dicer subfamily. (2146 aa)
LOC106593600poly(A)-specific ribonuclease PARN-like. (753 aa)
LOC106606043RNA-binding protein 24-B-like. (128 aa)
LOC106599087Roquin-1-like isoform X1. (1425 aa)
ENSSSAP00000008190Nocturnin b. (388 aa)
LOC106597766Nocturnin-like. (405 aa)
cnot3LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 3. (955 aa)
ENSSSAP00000010089annotation not available (75 aa)
dis3l2DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily. (1049 aa)
ENSSSAP00000010521annotation not available (551 aa)
LOC106611868CCR4-NOT transcription complex subunit 6-like isoform X1. (583 aa)
tisbButyrate response factor 1. (364 aa)
LOC106603492CCR4-NOT transcription complex subunit 7 isoform X2. (300 aa)
LOC106612716Zinc finger protein 36, C3H1 type-like 2. (400 aa)
LOC106560998CCR4-NOT transcription complex subunit 2-like isoform X3. (551 aa)
LOC106608164Zinc finger protein 36, C3H1 type-like 1 isoform X1. (346 aa)
tgfi1Protein PAT1 homolog 2 isoform X1. (595 aa)
exosc8Exosome complex component RRP43. (704 aa)
LOC106573951Roquin-1-like isoform X1. (960 aa)
LOC106560907YTH domain-containing family protein 2-like. (625 aa)
pan3PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...] (831 aa)
zc3h12aRibonuclease ZC3H12A. (615 aa)
EXOS9Exosome complex component RRP45-like. (94 aa)
LOC106597592CCR4-NOT transcription complex subunit 2-like. (339 aa)
LOC106584061Terminal uridylyltransferase 4-like isoform X2. (1565 aa)
ENSSSAP00000021569annotation not available (128 aa)
ENSSSAP00000021711annotation not available (55 aa)
LOC106610612Protein Smaug homolog 1-like isoform X1. (776 aa)
ENSSSAP00000022354annotation not available (128 aa)
ENSSSAP00000022531annotation not available (79 aa)
LOC106597766-2Nocturnin-like. (405 aa)
ENSSSAP00000022583annotation not available (94 aa)
LOC106596192rutC family protein in vnfA 5'region-like. (130 aa)
ENSSSAP00000022746annotation not available (94 aa)
LOC106596388Nocturnin-like. (405 aa)
PNPT1Polyribonucleotide nucleotidyltransferase 1, mitochondrial-like. (779 aa)
LOC106568378Roquin-2-like isoform X1. (1235 aa)
pde122',5'-phosphodiesterase 12. (586 aa)
LOC106595781mRNA-decapping enzyme 1B-like. (120 aa)
LOC106568923Roquin-1-like isoform X2. (1085 aa)
LOC106590917Terminal uridylyltransferase 7-like. (217 aa)
ENSSSAP00000034844annotation not available (94 aa)
ENSSSAP00000034985annotation not available (100 aa)
LOC106571976mRNA-decapping enzyme 1A-like isoform X1. (523 aa)
LOC106609972Protein PAT1 homolog 1-like isoform X1. (812 aa)
LOC106613585Roquin-1-like isoform X1. (1057 aa)
pan2PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent [...] (1197 aa)
exosc3Exosome complex component RRP40. (244 aa)
LOC106566956Exosome complex component RRP4-like. (247 aa)
LOC106580729Zinc finger protein 36, C3H1 type-like 1. (400 aa)
LOC106560426Terminal uridylyltransferase 4-like isoform X2. (1559 aa)
LOC106583205Ribonuclease ZC3H12A-like. (671 aa)
LOC106588906RNA-binding protein 24. (233 aa)
YTHDF1-2YTH domain-containing family protein 1-like isoform X3. (624 aa)
ENSSSAP00000049389Argonaute RISC catalytic component 2. (871 aa)
CNOT3CCR4-NOT transcription complex subunit 3. (689 aa)
LOC106561687Roquin-2-like isoform X1. (1099 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (171 aa)
ENSSSAP00000050742annotation not available (60 aa)
LOC106579538YTH domain-containing family protein 3-like isoform X1. (619 aa)
LOC106597194mRNA-decapping enzyme 1B-like. (478 aa)
LOC106595781-2mRNA-decapping enzyme 1B-like. (120 aa)
LOC106604834CCR4-NOT transcription complex subunit 6-like. (568 aa)
LOC106605151Protein argonaute-3-like. (922 aa)
LOC106561350CCR4-NOT transcription complex subunit 1-like isoform X11. (2376 aa)
exos2Exosome complex exonuclease RRP4. (296 aa)
ftoAlpha-ketoglutarate-dependent dioxygenase FTO isoform X1. (615 aa)
LOC106582737Putative helicase mov-10-B.1. (990 aa)
mettl14N6-adenosine-methyltransferase subunit METTL14. (93 aa)
LOC106588450CCR4-NOT transcription complex subunit 3-like isoform X3. (1007 aa)
LOC106567220YTH domain-containing family protein 1-like isoform X2. (605 aa)
ENSSSAP00000061457annotation not available (128 aa)
LOC106590438YTH domain-containing family protein 3-like. (620 aa)
exosc9Exosome complex component RRP45. (524 aa)
LOC106570475Protein argonaute-2; Required for RNA-mediated gene silencing (RNAi) by the RNA- induced silencing complex (RISC). The 'minimal RISC' appears to include ago2 bound to a short guide RNA such as a microRNA (miRNA) or short interfering RNA (siRNA). These guide RNAs direct RISC to complementary mRNAs that are targets for RISC-mediated gene silencing. The precise mechanism of gene silencing depends on the degree of complementarity between the miRNA or siRNA and its target. Binding of RISC to a perfectly complementary mRNA generally results in silencing due to endonucleolytic cleavage of the [...] (893 aa)
exosc5Exosome complex component RRP46 isoform X1. (228 aa)
rbm24RNA-binding protein 24. (232 aa)
cnot8CCR4-NOT transcription complex subunit 8. (285 aa)
ENSSSAP00000066332annotation not available (79 aa)
ENSSSAP00000067326annotation not available (94 aa)
LOC106590454PAB-dependent poly(A)-specific ribonuclease subunit PAN3-like isoform X1. (582 aa)
ENSSSAP00000069793annotation not available (79 aa)
LOC106585979LOW QUALITY PROTEIN: terminal uridylyltransferase 7-like. (1079 aa)
LOC106611287Zinc finger protein 36, C3H1 type-like 1. (395 aa)
dcpsm7GpppX diphosphatase. (330 aa)
LOC106602767Protein PAT1 homolog 1-like. (808 aa)
LOC106604687Nocturnin-like isoform X1. (474 aa)
LOC106602420Endoribonuclease Dicer-like isoform X1; Belongs to the helicase family. Dicer subfamily. (1995 aa)
LOC106581162Protein Smaug homolog 2-like isoform X1. (676 aa)
cnot6CCR4-NOT transcription complex, subunit 6 isoform X2. (557 aa)
LOC106589020Ribonuclease ZC3H12A-like. (700 aa)
mettl3N6-adenosine-methyltransferase 70 kDa subunit; Belongs to the MT-A70-like family. (590 aa)
LOC106585172U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
cnot2CCR4-NOT transcription complex subunit 2 isoform X1. (552 aa)
ENSSSAP00000080004CCR4-NOT transcription complex, subunit 1. (2324 aa)
ENSSSAP00000080632CCR4-NOT transcription complex, subunit 3b. (936 aa)
dhx36ATP-dependent RNA helicase DHX36. (780 aa)
LOC106613034Protein Smaug homolog 2-like isoform X2. (672 aa)
LOC106567372Pleckstrin homology domain-containing family N member 1-like isoform X1. (728 aa)
LOC106572136Pleckstrin homology domain-containing family N member 1-like isoform X1. (759 aa)
dcp2m7GpppN-mRNA hydrolase isoform X1. (402 aa)
ENSSSAP00000087416Methyltransferase like 16. (435 aa)
mov10Helicase MOV-10. (1023 aa)
LOC106605117Ribonuclease ZC3H12A-like. (662 aa)
hrsp12Ribonuclease UK114. (373 aa)
LOC106569767Protein argonaute-3; Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs; Belongs to the argonaute family. Ago subfamily. (878 aa)
LOC106572457YTH domain-containing family protein 1-like isoform X1. (614 aa)
LOC106585873CCR4-NOT transcription complex subunit 6-like isoform X1. (600 aa)
LOC106582818Protein argonaute-1 isoform X7; Belongs to the argonaute family. (903 aa)
i2c3Eukaryotic translation initiation factor 2C 3. (889 aa)
LOC106570868CCR4-NOT transcription complex subunit 6-like isoform X1. (570 aa)
PNPT1-2Polyribonucleotide nucleotidyltransferase 1, mitochondrial isoform X1. (777 aa)
LOC106580576U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
zfp36l1Zinc finger protein 36, C3H1 type-like 1. (421 aa)
LOC106602955Protein Smaug homolog 1-like isoform X1. (769 aa)
mettl16U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...] (594 aa)
LOC106612892DNA-directed RNA polymerase II subunit RPB4. (142 aa)
LOC106587580Alpha-ketoglutarate-dependent dioxygenase FTO-like. (462 aa)
LOC106602708Zinc finger protein 36, C3H1 type-like 1. (385 aa)
exosc7Exosome complex exonuclease RRP42. (316 aa)
LOC106580723Tristetraprolin-like. (364 aa)
mlh1DNA mismatch repair protein Mlh1. (729 aa)
rpb4DNA-directed RNA polymerase II subunit RPB4. (143 aa)
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.