10 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106601422-2	THO complex subunit 4-like. (286 aa)
	LOC106610663	YTH domain-containing family protein 2-like. (625 aa)
	LOC106601422-3	THO complex subunit 4-like. (286 aa)
	ALYREF	THO complex subunit 4-like. (256 aa)
	LOC106572208	Nuclease-sensitive element-binding protein 1-like isoform X1. (379 aa)
	LOC106560907	YTH domain-containing family protein 2-like. (625 aa)
	LOC106601422	THO complex subunit 4-like isoform X1. (286 aa)
	LOC106564930	THO complex subunit 4-A-like. (272 aa)
	LOC106588091	THO complex subunit 4-like. (274 aa)
	YBX1	Y-box binding protein-2 isoform X2. (322 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALYREF	LOC106564930	ENSSSAP00000007113	ENSSSAP00000044795	THO complex subunit 4-like.	THO complex subunit 4-A-like.	0.902
ALYREF	LOC106572208	ENSSSAP00000007113	ENSSSAP00000015152	THO complex subunit 4-like.	Nuclease-sensitive element-binding protein 1-like isoform X1.	0.414
ALYREF	LOC106588091	ENSSSAP00000007113	ENSSSAP00000045131	THO complex subunit 4-like.	THO complex subunit 4-like.	0.902
ALYREF	LOC106601422	ENSSSAP00000007113	ENSSSAP00000002630	THO complex subunit 4-like.	THO complex subunit 4-like isoform X1.	0.901
ALYREF	YBX1	ENSSSAP00000007113	ENSSSAP00000072764	THO complex subunit 4-like.	Y-box binding protein-2 isoform X2.	0.414
LOC106564930	ALYREF	ENSSSAP00000044795	ENSSSAP00000007113	THO complex subunit 4-A-like.	THO complex subunit 4-like.	0.902
LOC106564930	LOC106572208	ENSSSAP00000044795	ENSSSAP00000015152	THO complex subunit 4-A-like.	Nuclease-sensitive element-binding protein 1-like isoform X1.	0.414
LOC106564930	LOC106588091	ENSSSAP00000044795	ENSSSAP00000045131	THO complex subunit 4-A-like.	THO complex subunit 4-like.	0.900
LOC106564930	LOC106601422	ENSSSAP00000044795	ENSSSAP00000002630	THO complex subunit 4-A-like.	THO complex subunit 4-like isoform X1.	0.902
LOC106564930	YBX1	ENSSSAP00000044795	ENSSSAP00000072764	THO complex subunit 4-A-like.	Y-box binding protein-2 isoform X2.	0.414
LOC106572208	ALYREF	ENSSSAP00000015152	ENSSSAP00000007113	Nuclease-sensitive element-binding protein 1-like isoform X1.	THO complex subunit 4-like.	0.414
LOC106572208	LOC106564930	ENSSSAP00000015152	ENSSSAP00000044795	Nuclease-sensitive element-binding protein 1-like isoform X1.	THO complex subunit 4-A-like.	0.414
LOC106572208	LOC106588091	ENSSSAP00000015152	ENSSSAP00000045131	Nuclease-sensitive element-binding protein 1-like isoform X1.	THO complex subunit 4-like.	0.414
LOC106572208	LOC106601422	ENSSSAP00000015152	ENSSSAP00000002630	Nuclease-sensitive element-binding protein 1-like isoform X1.	THO complex subunit 4-like isoform X1.	0.414
LOC106572208	LOC106601422-2	ENSSSAP00000015152	ENSSSAP00000002813	Nuclease-sensitive element-binding protein 1-like isoform X1.	THO complex subunit 4-like.	0.414
LOC106572208	LOC106601422-3	ENSSSAP00000015152	ENSSSAP00000005299	Nuclease-sensitive element-binding protein 1-like isoform X1.	THO complex subunit 4-like.	0.414
LOC106588091	ALYREF	ENSSSAP00000045131	ENSSSAP00000007113	THO complex subunit 4-like.	THO complex subunit 4-like.	0.902
LOC106588091	LOC106564930	ENSSSAP00000045131	ENSSSAP00000044795	THO complex subunit 4-like.	THO complex subunit 4-A-like.	0.900
LOC106588091	LOC106572208	ENSSSAP00000045131	ENSSSAP00000015152	THO complex subunit 4-like.	Nuclease-sensitive element-binding protein 1-like isoform X1.	0.414
LOC106588091	LOC106601422	ENSSSAP00000045131	ENSSSAP00000002630	THO complex subunit 4-like.	THO complex subunit 4-like isoform X1.	0.902