57 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106605446	Mothers against decapentaplegic homolog. (565 aa)
	smad4	Mothers against decapentaplegic homolog. (510 aa)
	LOC106603011	EMILIN-1-like isoform X1. (1199 aa)
	spry1	Protein sprouty homolog 1. (349 aa)
	LOC106609153	Metalloproteinase inhibitor 3-like. (221 aa)
	errfi	ERBB receptor feedback inhibitor 1 isoform X1. (495 aa)
	atf3-2	Cyclic AMP-dependent transcription factor ATF-3. (221 aa)
	LOC106569881	Mothers against decapentaplegic homolog. (589 aa)
	LOC106603149	Uncharacterized protein LOC106603149. (910 aa)
	LOC106574419	Protein sprouty homolog 2-like. (348 aa)
	LOC106607825	Cyclic AMP-dependent transcription factor ATF-3-like. (200 aa)
	cssa09h3orf33	Protein C3orf33 homolog isoform X1. (426 aa)
	LOC106607260	Prohibitin. (275 aa)
	ptprc	Receptor-type tyrosine-protein phosphatase C isoform X1. (1412 aa)
	LOC106571081	EMILIN-1-like isoform X1. (900 aa)
	LOC106607590	Dual specificity protein phosphatase 10-like isoform X1; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (487 aa)
	LOC106565918	ERBB receptor feedback inhibitor 1-like isoform X1. (460 aa)
	LOC106568180	Mothers against decapentaplegic homolog. (548 aa)
	LOC106612295	TNFAIP3-interacting protein 1-like isoform X5. (655 aa)
	gper1	G-protein coupled estrogen receptor 1; Belongs to the G-protein coupled receptor 1 family. (340 aa)
	LOC106588319	Mothers against decapentaplegic homolog. (587 aa)
	LOC106604149	TNFAIP3-interacting protein 1-like isoform X6. (680 aa)
	dab2	Disabled homolog 2 isoform X1. (808 aa)
	adipoq	Adiponectin. (296 aa)
	LOC106575275	Protein sprouty homolog 2-like. (353 aa)
	LOC106571792	Serine/threonine-protein kinase WNK2-like isoform X4. (2909 aa)
	LOC106603590	Protein sprouty homolog 3-like. (290 aa)
	LOC106608293	Proto-oncogene c-Fos-like. (450 aa)
	LOC106563487	Uncharacterized protein LOC106563487. (885 aa)
	LOC106587413	Inactive serine/threonine-protein kinase VRK3-like. (508 aa)
	SMAD4	Mothers against decapentaplegic homolog. (552 aa)
	phb	Prohibitin. (326 aa)
	ENSSSAP00000000509	annotation not available (488 aa)
	LOC106563948	Mothers against decapentaplegic homolog. (554 aa)
	spy1	Sprouty homolog 1 isoform X1. (349 aa)
	LOC106611378	EMILIN-1-like. (1216 aa)
	ENSSSAP00000010011	Folliculin. (566 aa)
	LOC106564156	Peptidyl-prolyl cis-trans isomerase. (269 aa)
	LOC106572213	ERBB receptor feedback inhibitor 1-like. (419 aa)
	LOC106566616	Serine/threonine-protein kinase WNK2-like isoform X10. (2590 aa)
	LOC106577129	Folliculin-like. (566 aa)
	ENSSSAP00000022897	Vegetative cell wall protein gp1-like. (241 aa)
	vrk3	Serine/threonine-protein kinase VRK3 isoform X1. (509 aa)
	spred3	Sprouty-related, EVH1 domain-containing protein 3. (147 aa)
	LOC106571212	Dual specificity protein phosphatase 10-like. (498 aa)
	SPRY3	Protein sprouty homolog 3-like. (284 aa)
	ptpn2	Tyrosine-protein phosphatase non-receptor type. (400 aa)
	LOC106572479	Tyrosine-protein phosphatase non-receptor type. (444 aa)
	itgb1bp1	Integrin beta-1-binding protein 1 isoform X1. (199 aa)
	LOC106580167	Mothers against decapentaplegic homolog. (579 aa)
	LOC106567201	Tyrosine-protein phosphatase non-receptor type. (441 aa)
	LOC106565160	Serine/threonine-protein kinase WNK2-like isoform X1. (2145 aa)
	LOC106571032	Proto-oncogene c-Fos-like. (452 aa)
	dab2-2	Disabled homolog 2 isoform X1. (794 aa)
	timp3	Metalloproteinase inhibitor 3 precursor. (215 aa)
	LOC106567494	Protein sprouty homolog 4-like. (310 aa)
	SPRY4	Protein sprouty homolog 4-like. (300 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106563487	LOC106587413	ENSSSAP00000050975	ENSSSAP00000120146	Uncharacterized protein LOC106563487.	Inactive serine/threonine-protein kinase VRK3-like.	0.417
LOC106563487	vrk3	ENSSSAP00000050975	ENSSSAP00000026291	Uncharacterized protein LOC106563487.	Serine/threonine-protein kinase VRK3 isoform X1.	0.417
LOC106567201	LOC106572479	ENSSSAP00000042894	ENSSSAP00000039427	Tyrosine-protein phosphatase non-receptor type.	Tyrosine-protein phosphatase non-receptor type.	0.900
LOC106567494	spry1	ENSSSAP00000108910	ENSSSAP00000098028	Protein sprouty homolog 4-like.	Protein sprouty homolog 1.	0.632
LOC106567494	spy1	ENSSSAP00000108910	ENSSSAP00000006140	Protein sprouty homolog 4-like.	Sprouty homolog 1 isoform X1.	0.632
LOC106571212	LOC106587413	ENSSSAP00000030088	ENSSSAP00000120146	Dual specificity protein phosphatase 10-like.	Inactive serine/threonine-protein kinase VRK3-like.	0.417
LOC106571212	vrk3	ENSSSAP00000030088	ENSSSAP00000026291	Dual specificity protein phosphatase 10-like.	Serine/threonine-protein kinase VRK3 isoform X1.	0.417
LOC106572479	LOC106567201	ENSSSAP00000039427	ENSSSAP00000042894	Tyrosine-protein phosphatase non-receptor type.	Tyrosine-protein phosphatase non-receptor type.	0.900
LOC106574419	spry1	ENSSSAP00000090861	ENSSSAP00000098028	Protein sprouty homolog 2-like.	Protein sprouty homolog 1.	0.588
LOC106574419	spy1	ENSSSAP00000090861	ENSSSAP00000006140	Protein sprouty homolog 2-like.	Sprouty homolog 1 isoform X1.	0.577
LOC106575275	spry1	ENSSSAP00000060137	ENSSSAP00000098028	Protein sprouty homolog 2-like.	Protein sprouty homolog 1.	0.589
LOC106575275	spy1	ENSSSAP00000060137	ENSSSAP00000006140	Protein sprouty homolog 2-like.	Sprouty homolog 1 isoform X1.	0.588
LOC106587413	LOC106563487	ENSSSAP00000120146	ENSSSAP00000050975	Inactive serine/threonine-protein kinase VRK3-like.	Uncharacterized protein LOC106563487.	0.417
LOC106587413	LOC106571212	ENSSSAP00000120146	ENSSSAP00000030088	Inactive serine/threonine-protein kinase VRK3-like.	Dual specificity protein phosphatase 10-like.	0.417
LOC106587413	LOC106603149	ENSSSAP00000120146	ENSSSAP00000091198	Inactive serine/threonine-protein kinase VRK3-like.	Uncharacterized protein LOC106603149.	0.417
LOC106587413	LOC106607590	ENSSSAP00000120146	ENSSSAP00000075729	Inactive serine/threonine-protein kinase VRK3-like.	Dual specificity protein phosphatase 10-like isoform X1; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.417
LOC106603149	LOC106587413	ENSSSAP00000091198	ENSSSAP00000120146	Uncharacterized protein LOC106603149.	Inactive serine/threonine-protein kinase VRK3-like.	0.417
LOC106603149	vrk3	ENSSSAP00000091198	ENSSSAP00000026291	Uncharacterized protein LOC106603149.	Serine/threonine-protein kinase VRK3 isoform X1.	0.417
LOC106603590	spry1	ENSSSAP00000053666	ENSSSAP00000098028	Protein sprouty homolog 3-like.	Protein sprouty homolog 1.	0.608
LOC106603590	spy1	ENSSSAP00000053666	ENSSSAP00000006140	Protein sprouty homolog 3-like.	Sprouty homolog 1 isoform X1.	0.609