13 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	adipoq	Adiponectin. (296 aa)
	IL-10	Interleukin-10-like. (123 aa)
	LOC106600384	Myeloid-associated differentiation marker homolog. (293 aa)
	LOC100136512	Interleukin-10. (300 aa)
	LOC106566262	Interleukin-10-like. (192 aa)
	MBP	Myelin basic protein. (166 aa)
	LOC106569375	Myeloid-associated differentiation marker homolog. (292 aa)
	ENSSSAP00000027722	Myelin basic protein b. (189 aa)
	LOC106606522	Myeloid-associated differentiation marker homolog. (284 aa)
	LOC106606521	Myeloid-associated differentiation marker-like. (284 aa)
	LOC106606538	Myeloid-associated differentiation marker-like. (284 aa)
	LOC106606558	Myeloid-associated differentiation marker homolog. (284 aa)
	LOC106609018	Myeloid-associated differentiation marker homolog. (291 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
IL-10	LOC100136512	ENSSSAP00000068333	ENSSSAP00000080196	Interleukin-10-like.	Interleukin-10.	0.900
IL-10	adipoq	ENSSSAP00000068333	ENSSSAP00000060475	Interleukin-10-like.	Adiponectin.	0.511
LOC100136512	IL-10	ENSSSAP00000080196	ENSSSAP00000068333	Interleukin-10.	Interleukin-10-like.	0.900
LOC100136512	adipoq	ENSSSAP00000080196	ENSSSAP00000060475	Interleukin-10.	Adiponectin.	0.511
LOC106566262	adipoq	ENSSSAP00000083358	ENSSSAP00000060475	Interleukin-10-like.	Adiponectin.	0.511
adipoq	IL-10	ENSSSAP00000060475	ENSSSAP00000068333	Adiponectin.	Interleukin-10-like.	0.511
adipoq	LOC100136512	ENSSSAP00000060475	ENSSSAP00000080196	Adiponectin.	Interleukin-10.	0.511
adipoq	LOC106566262	ENSSSAP00000060475	ENSSSAP00000083358	Adiponectin.	Interleukin-10-like.	0.511