36 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106584153	Ubiquitin carboxyl-terminal hydrolase. (356 aa)
	uchl5	Ubiquitin carboxyl-terminal hydrolase. (331 aa)
	LOC106582904	DNA-binding protein inhibitor ID-1-like. (130 aa)
	LOC106569325	Ubiquitin carboxyl-terminal hydrolase. (559 aa)
	LOC106605214	Large proline-rich protein BAG6-like isoform X2. (1223 aa)
	LOC106612984	Sacsin-like isoform X1. (4594 aa)
	psmg1	Proteasome assembly chaperone 1. (285 aa)
	zfand1	AN1-type zinc finger protein 1. (270 aa)
	LOC106601193-2	UV excision repair protein RAD23 homolog A-like isoform X1. (373 aa)
	LOC106601193	UV excision repair protein RAD23 homolog A-like. (381 aa)
	LOC106596053	UV excision repair protein RAD23 homolog A-like. (130 aa)
	LOC106581114	Sacsin-like isoform X1. (4600 aa)
	psmf1	Proteasome (Prosome, macropain) inhibitor subunit 1. (288 aa)
	BAG6	Large proline-rich protein BAG6-like isoform X1. (1219 aa)
	LOC106588704	Large proline-rich protein BAG6-like. (1167 aa)
	LOC106568039	Sacsin-like. (4185 aa)
	LOC106572470	Proteasomal ubiquitin receptor ADRM1-like isoform X1. (367 aa)
	LOC106573817	UV excision repair protein RAD23 homolog B-like isoform X1. (468 aa)
	LOC106589746	Proteasome activator complex subunit 4B-like isoform X1. (1847 aa)
	psde	26S proteasome non-ATPase regulatory subunit 14. (353 aa)
	ENSSSAP00000027354	annotation not available (109 aa)
	adrm1	ADRM1 protein isoform X1. (413 aa)
	LOC106610967	Sacsin-like isoform X1. (4307 aa)
	LOC106604863	Wolframin-like. (972 aa)
	ENSSSAP00000044670	Proteasome activator subunit 4a. (1811 aa)
	ENSSSAP00000046013	annotation not available (562 aa)
	RAD23B	UV excision repair protein RAD23 homolog B-like isoform X1. (375 aa)
	LOC106567210	Proteasomal ubiquitin receptor ADRM1-like. (408 aa)
	bag6	Large proline-rich protein BAG6 isoform X2. (1205 aa)
	PSDE	26S proteasome non-ATPase regulatory subunit 14. (350 aa)
	LOC106572086	DNA-binding protein inhibitor ID-1-like. (126 aa)
	LOC106600434	Ubiquitin carboxyl-terminal hydrolase. (503 aa)
	LOC106611899	Wolframin-like isoform X2. (974 aa)
	rd23a	UV excision repair protein RAD23 homolog A. (387 aa)
	LOC106613684	UV excision repair protein RAD23 homolog B-like. (478 aa)
	LOC106565791	DNA-binding protein inhibitor ID-1-like. (177 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAG6	LOC106573817	ENSSSAP00000101287	ENSSSAP00000096631	Large proline-rich protein BAG6-like isoform X1.	UV excision repair protein RAD23 homolog B-like isoform X1.	0.402
BAG6	LOC106596053	ENSSSAP00000101287	ENSSSAP00000090312	Large proline-rich protein BAG6-like isoform X1.	UV excision repair protein RAD23 homolog A-like.	0.402
BAG6	LOC106601193	ENSSSAP00000101287	ENSSSAP00000089267	Large proline-rich protein BAG6-like isoform X1.	UV excision repair protein RAD23 homolog A-like.	0.402
BAG6	LOC106601193-2	ENSSSAP00000101287	ENSSSAP00000089148	Large proline-rich protein BAG6-like isoform X1.	UV excision repair protein RAD23 homolog A-like isoform X1.	0.402
BAG6	LOC106613684	ENSSSAP00000101287	ENSSSAP00000006628	Large proline-rich protein BAG6-like isoform X1.	UV excision repair protein RAD23 homolog B-like.	0.402
BAG6	PSDE	ENSSSAP00000101287	ENSSSAP00000061082	Large proline-rich protein BAG6-like isoform X1.	26S proteasome non-ATPase regulatory subunit 14.	0.493
BAG6	RAD23B	ENSSSAP00000101287	ENSSSAP00000049743	Large proline-rich protein BAG6-like isoform X1.	UV excision repair protein RAD23 homolog B-like isoform X1.	0.402
BAG6	psde	ENSSSAP00000101287	ENSSSAP00000091798	Large proline-rich protein BAG6-like isoform X1.	26S proteasome non-ATPase regulatory subunit 14.	0.493
BAG6	rd23a	ENSSSAP00000101287	ENSSSAP00000006441	Large proline-rich protein BAG6-like isoform X1.	UV excision repair protein RAD23 homolog A.	0.402
ENSSSAP00000044670	ENSSSAP00000046013	ENSSSAP00000044670	ENSSSAP00000046013	Proteasome activator subunit 4a.	annotation not available	0.438
ENSSSAP00000044670	LOC106567210	ENSSSAP00000044670	ENSSSAP00000051012	Proteasome activator subunit 4a.	Proteasomal ubiquitin receptor ADRM1-like.	0.834
ENSSSAP00000044670	LOC106569325	ENSSSAP00000044670	ENSSSAP00000072803	Proteasome activator subunit 4a.	Ubiquitin carboxyl-terminal hydrolase.	0.811
ENSSSAP00000044670	LOC106572470	ENSSSAP00000044670	ENSSSAP00000097637	Proteasome activator subunit 4a.	Proteasomal ubiquitin receptor ADRM1-like isoform X1.	0.834
ENSSSAP00000044670	LOC106573817	ENSSSAP00000044670	ENSSSAP00000096631	Proteasome activator subunit 4a.	UV excision repair protein RAD23 homolog B-like isoform X1.	0.443
ENSSSAP00000044670	LOC106584153	ENSSSAP00000044670	ENSSSAP00000020808	Proteasome activator subunit 4a.	Ubiquitin carboxyl-terminal hydrolase.	0.738
ENSSSAP00000044670	LOC106596053	ENSSSAP00000044670	ENSSSAP00000090312	Proteasome activator subunit 4a.	UV excision repair protein RAD23 homolog A-like.	0.443
ENSSSAP00000044670	LOC106600434	ENSSSAP00000044670	ENSSSAP00000000971	Proteasome activator subunit 4a.	Ubiquitin carboxyl-terminal hydrolase.	0.811
ENSSSAP00000044670	LOC106601193	ENSSSAP00000044670	ENSSSAP00000089267	Proteasome activator subunit 4a.	UV excision repair protein RAD23 homolog A-like.	0.443
ENSSSAP00000044670	LOC106601193-2	ENSSSAP00000044670	ENSSSAP00000089148	Proteasome activator subunit 4a.	UV excision repair protein RAD23 homolog A-like isoform X1.	0.443
ENSSSAP00000044670	LOC106613684	ENSSSAP00000044670	ENSSSAP00000006628	Proteasome activator subunit 4a.	UV excision repair protein RAD23 homolog B-like.	0.443