9 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSSAP00000016990	annotation not available (257 aa)
	LOC106575791	SOSS complex subunit B2-like. (203 aa)
	NABP2	SOSS complex subunit B1-B-like isoform X1. (199 aa)
	LOC106588323	Integrator complex subunit 3 isoform X2. (1031 aa)
	LOC106581684	SOSS complex subunit B2-like. (217 aa)
	LOC106569880	Integrator complex subunit 3-like isoform X2. (1031 aa)
	LOC106568576	SOSS complex subunit C-like. (80 aa)
	LOC106583347	SOSS complex subunit B1-like. (193 aa)
	inip	SOSS complex subunit C; Component of the SOSS complex, a multiprotein complex that functions downstream of the MRN complex to promote DNA repair and G2/M checkpoint. The SOSS complex associates with single-stranded DNA at DNA lesions and influences diverse endpoints in the cellular DNA damage response including cell-cycle checkpoint activation, recombinational repair and maintenance of genomic stability. Required for efficient homologous recombination-dependent repair of double-strand breaks (DSBs) (By similarity). (109 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000016990	LOC106568576	ENSSSAP00000016990	ENSSSAP00000094876	annotation not available	SOSS complex subunit C-like.	0.757
ENSSSAP00000016990	LOC106569880	ENSSSAP00000016990	ENSSSAP00000091387	annotation not available	Integrator complex subunit 3-like isoform X2.	0.912
ENSSSAP00000016990	LOC106588323	ENSSSAP00000016990	ENSSSAP00000040131	annotation not available	Integrator complex subunit 3 isoform X2.	0.912
ENSSSAP00000016990	inip	ENSSSAP00000016990	ENSSSAP00000047928	annotation not available	SOSS complex subunit C; Component of the SOSS complex, a multiprotein complex that functions downstream of the MRN complex to promote DNA repair and G2/M checkpoint. The SOSS complex associates with single-stranded DNA at DNA lesions and influences diverse endpoints in the cellular DNA damage response including cell-cycle checkpoint activation, recombinational repair and maintenance of genomic stability. Required for efficient homologous recombination-dependent repair of double-strand breaks (DSBs) (By similarity).	0.757
LOC106568576	ENSSSAP00000016990	ENSSSAP00000094876	ENSSSAP00000016990	SOSS complex subunit C-like.	annotation not available	0.757
LOC106568576	LOC106569880	ENSSSAP00000094876	ENSSSAP00000091387	SOSS complex subunit C-like.	Integrator complex subunit 3-like isoform X2.	0.961
LOC106568576	LOC106575791	ENSSSAP00000094876	ENSSSAP00000024087	SOSS complex subunit C-like.	SOSS complex subunit B2-like.	0.757
LOC106568576	LOC106581684	ENSSSAP00000094876	ENSSSAP00000055623	SOSS complex subunit C-like.	SOSS complex subunit B2-like.	0.757
LOC106568576	LOC106583347	ENSSSAP00000094876	ENSSSAP00000054148	SOSS complex subunit C-like.	SOSS complex subunit B1-like.	0.757
LOC106568576	LOC106588323	ENSSSAP00000094876	ENSSSAP00000040131	SOSS complex subunit C-like.	Integrator complex subunit 3 isoform X2.	0.961
LOC106568576	NABP2	ENSSSAP00000094876	ENSSSAP00000045448	SOSS complex subunit C-like.	SOSS complex subunit B1-B-like isoform X1.	0.757
LOC106569880	ENSSSAP00000016990	ENSSSAP00000091387	ENSSSAP00000016990	Integrator complex subunit 3-like isoform X2.	annotation not available	0.912
LOC106569880	LOC106568576	ENSSSAP00000091387	ENSSSAP00000094876	Integrator complex subunit 3-like isoform X2.	SOSS complex subunit C-like.	0.961
LOC106569880	LOC106575791	ENSSSAP00000091387	ENSSSAP00000024087	Integrator complex subunit 3-like isoform X2.	SOSS complex subunit B2-like.	0.912
LOC106569880	LOC106581684	ENSSSAP00000091387	ENSSSAP00000055623	Integrator complex subunit 3-like isoform X2.	SOSS complex subunit B2-like.	0.912
LOC106569880	LOC106583347	ENSSSAP00000091387	ENSSSAP00000054148	Integrator complex subunit 3-like isoform X2.	SOSS complex subunit B1-like.	0.912
LOC106569880	NABP2	ENSSSAP00000091387	ENSSSAP00000045448	Integrator complex subunit 3-like isoform X2.	SOSS complex subunit B1-B-like isoform X1.	0.912
LOC106569880	inip	ENSSSAP00000091387	ENSSSAP00000047928	Integrator complex subunit 3-like isoform X2.	SOSS complex subunit C; Component of the SOSS complex, a multiprotein complex that functions downstream of the MRN complex to promote DNA repair and G2/M checkpoint. The SOSS complex associates with single-stranded DNA at DNA lesions and influences diverse endpoints in the cellular DNA damage response including cell-cycle checkpoint activation, recombinational repair and maintenance of genomic stability. Required for efficient homologous recombination-dependent repair of double-strand breaks (DSBs) (By similarity).	0.961
LOC106575791	LOC106568576	ENSSSAP00000024087	ENSSSAP00000094876	SOSS complex subunit B2-like.	SOSS complex subunit C-like.	0.757
LOC106575791	LOC106569880	ENSSSAP00000024087	ENSSSAP00000091387	SOSS complex subunit B2-like.	Integrator complex subunit 3-like isoform X2.	0.912