11 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106560426	Terminal uridylyltransferase 4-like isoform X2. (1559 aa)
	LOC106587575	Non-canonical poly(A) RNA polymerase PAPD5-like. (648 aa)
	LOC106590917	Terminal uridylyltransferase 7-like. (217 aa)
	LOC100380868	Terminal uridylyltransferase 7. (897 aa)
	LOC106573258	Non-canonical poly(A) RNA polymerase PAPD5-like. (686 aa)
	tent4a	Non-canonical poly(A) RNA polymerase PAPD7 isoform X2. (764 aa)
	LOC106584061	Terminal uridylyltransferase 4-like isoform X2. (1565 aa)
	LOC106585979	LOW QUALITY PROTEIN: terminal uridylyltransferase 7-like. (1079 aa)
	ENSSSAP00000098630	Non-canonical poly(A) RNA polymerase PAPD5-like. (561 aa)
	LOC106588695	Non-canonical poly(A) RNA polymerase PAPD7-like isoform X1. (766 aa)
	papd5	Non-canonical poly(A) RNA polymerase PAPD5 isoform X2. (614 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000098630	LOC106573258	ENSSSAP00000098630	ENSSSAP00000069531	Non-canonical poly(A) RNA polymerase PAPD5-like.	Non-canonical poly(A) RNA polymerase PAPD5-like.	0.902
ENSSSAP00000098630	LOC106587575	ENSSSAP00000098630	ENSSSAP00000104327	Non-canonical poly(A) RNA polymerase PAPD5-like.	Non-canonical poly(A) RNA polymerase PAPD5-like.	0.900
LOC106573258	ENSSSAP00000098630	ENSSSAP00000069531	ENSSSAP00000098630	Non-canonical poly(A) RNA polymerase PAPD5-like.	Non-canonical poly(A) RNA polymerase PAPD5-like.	0.902
LOC106573258	LOC106587575	ENSSSAP00000069531	ENSSSAP00000104327	Non-canonical poly(A) RNA polymerase PAPD5-like.	Non-canonical poly(A) RNA polymerase PAPD5-like.	0.902
LOC106587575	ENSSSAP00000098630	ENSSSAP00000104327	ENSSSAP00000098630	Non-canonical poly(A) RNA polymerase PAPD5-like.	Non-canonical poly(A) RNA polymerase PAPD5-like.	0.900
LOC106587575	LOC106573258	ENSSSAP00000104327	ENSSSAP00000069531	Non-canonical poly(A) RNA polymerase PAPD5-like.	Non-canonical poly(A) RNA polymerase PAPD5-like.	0.902