22 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	fto	Alpha-ketoglutarate-dependent dioxygenase FTO isoform X1. (615 aa)
	alkbh4	Alkylated DNA repair protein alkB homolog 4. (231 aa)
	alkbh2	Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 isoform X1. (260 aa)
	LOC106577185	Methylcytosine dioxygenase TET1-like isoform X1. (1947 aa)
	LOC106613168	Methylcytosine dioxygenase TET1-like isoform X1. (2378 aa)
	LOC106580493	Methylcytosine dioxygenase TET3-like isoform X1. (2064 aa)
	LOC100196684	Probable C->U-editing enzyme APOBEC-2. (303 aa)
	abec2	Probable C->U-editing enzyme APOBEC-2 isoform X1. (278 aa)
	LOC106585101	Methylcytosine dioxygenase TET3-like isoform X1. (2114 aa)
	LOC106587580	Alpha-ketoglutarate-dependent dioxygenase FTO-like. (462 aa)
	alkbh1	Alkylated DNA repair protein alkB homolog 1 isoform X2. (381 aa)
	LOC106602283	Methylcytosine dioxygenase TET2-like. (1917 aa)
	LOC106576591	DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. (342 aa)
	LOC106576591-2	DNA-(apurinic or apyrimidinic site) lyase-like. (342 aa)
	LOC106576980	Single-stranded DNA cytosine deaminase-like. (213 aa)
	LOC106584663	G/T mismatch-specific thymine DNA glycosylase-like isoform X1. (457 aa)
	LOC106584662	G/T mismatch-specific thymine DNA glycosylase-like isoform X1. (436 aa)
	LOC106561087	G/T mismatch-specific thymine DNA glycosylase-like isoform X1. (467 aa)
	LOC106573010	Probable C->U-editing enzyme APOBEC-2. (212 aa)
	LOC106575151	Single-stranded DNA cytosine deaminase-like. (213 aa)
	apex1	Salmo salar APEX nuclease (multifunctional DNA repair enzyme) 1 (apex1), mRNA. (344 aa)
	ENSSSAP00000054384	Tet methylcytosine dioxygenase 2. (1669 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100196684	LOC106575151	ENSSSAP00000119705	ENSSSAP00000051553	Probable C->U-editing enzyme APOBEC-2.	Single-stranded DNA cytosine deaminase-like.	0.538
LOC100196684	LOC106576980	ENSSSAP00000119705	ENSSSAP00000016667	Probable C->U-editing enzyme APOBEC-2.	Single-stranded DNA cytosine deaminase-like.	0.538
LOC106561087	LOC106575151	ENSSSAP00000029042	ENSSSAP00000051553	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	Single-stranded DNA cytosine deaminase-like.	0.466
LOC106561087	LOC106576591	ENSSSAP00000029042	ENSSSAP00000013408	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends.	0.704
LOC106561087	LOC106576591-2	ENSSSAP00000029042	ENSSSAP00000013613	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	DNA-(apurinic or apyrimidinic site) lyase-like.	0.704
LOC106561087	LOC106576980	ENSSSAP00000029042	ENSSSAP00000016667	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	Single-stranded DNA cytosine deaminase-like.	0.466
LOC106561087	LOC106577185	ENSSSAP00000029042	ENSSSAP00000081752	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	Methylcytosine dioxygenase TET1-like isoform X1.	0.414
LOC106561087	LOC106580493	ENSSSAP00000029042	ENSSSAP00000095953	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	Methylcytosine dioxygenase TET3-like isoform X1.	0.414
LOC106561087	LOC106584662	ENSSSAP00000029042	ENSSSAP00000019635	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	0.900
LOC106561087	LOC106584663	ENSSSAP00000029042	ENSSSAP00000019574	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	0.903
LOC106561087	LOC106585101	ENSSSAP00000029042	ENSSSAP00000118923	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	Methylcytosine dioxygenase TET3-like isoform X1.	0.414
LOC106561087	LOC106613168	ENSSSAP00000029042	ENSSSAP00000084654	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	Methylcytosine dioxygenase TET1-like isoform X1.	0.414
LOC106561087	apex1	ENSSSAP00000029042	ENSSSAP00000052174	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	Salmo salar APEX nuclease (multifunctional DNA repair enzyme) 1 (apex1), mRNA.	0.704
LOC106573010	LOC106575151	ENSSSAP00000031682	ENSSSAP00000051553	Probable C->U-editing enzyme APOBEC-2.	Single-stranded DNA cytosine deaminase-like.	0.538
LOC106573010	LOC106576980	ENSSSAP00000031682	ENSSSAP00000016667	Probable C->U-editing enzyme APOBEC-2.	Single-stranded DNA cytosine deaminase-like.	0.538
LOC106575151	LOC100196684	ENSSSAP00000051553	ENSSSAP00000119705	Single-stranded DNA cytosine deaminase-like.	Probable C->U-editing enzyme APOBEC-2.	0.538
LOC106575151	LOC106561087	ENSSSAP00000051553	ENSSSAP00000029042	Single-stranded DNA cytosine deaminase-like.	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	0.466
LOC106575151	LOC106573010	ENSSSAP00000051553	ENSSSAP00000031682	Single-stranded DNA cytosine deaminase-like.	Probable C->U-editing enzyme APOBEC-2.	0.538
LOC106575151	LOC106576980	ENSSSAP00000051553	ENSSSAP00000016667	Single-stranded DNA cytosine deaminase-like.	Single-stranded DNA cytosine deaminase-like.	0.900
LOC106575151	LOC106584662	ENSSSAP00000051553	ENSSSAP00000019635	Single-stranded DNA cytosine deaminase-like.	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	0.466