21 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PRDM9	Histone-lysine N-methyltransferase PRDM9. (823 aa)
	nfyc	Nuclear transcription factor Y subunit gamma isoform X1. (375 aa)
	LOC106611474	RNA polymerase-associated protein RTF1 homolog. (767 aa)
	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X4. (1072 aa)
	LOC106562103	RNA polymerase-associated protein CTR9 homolog. (1151 aa)
	LOC106604253	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit-like isoform X8. (1065 aa)
	LOC106589631	Histone-lysine N-methyltransferase PRDM9-like isoform X1. (951 aa)
	ENSSSAP00000088306	Zinc finger protein 335-like. (955 aa)
	nfya	Nuclear transcription factor Y subunit alpha. (343 aa)
	LOC106582800	WD repeat-containing protein 82-like isoform X1. (607 aa)
	ctr9	RNA polymerase-associated protein CTR9 homolog. (1158 aa)
	WDR82	WD repeat-containing protein 82-like. (325 aa)
	LOC106600707	BEN domain-containing protein 3-like. (832 aa)
	LOC106588897	Nuclear transcription factor Y subunit gamma-like isoform X2. (392 aa)
	LOC106566398	Zinc finger protein 335-like isoform X1. (1742 aa)
	LOC106566364	Nuclear transcription factor Y subunit alpha-like isoform X1. (395 aa)
	LOC106565976	WD repeat-containing protein 82. (559 aa)
	LOC106583083	Nuclear transcription factor Y subunit alpha-like isoform X1. (331 aa)
	BEND3	BEN domain-containing protein 3-like. (829 aa)
	LOC106610521	Histone-lysine N-methyltransferase PRDM9-like. (778 aa)
	rtf1	RNA polymerase-associated protein RTF1 homolog isoform X1. (694 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106562103	LOC106565976	ENSSSAP00000083183	ENSSSAP00000029960	RNA polymerase-associated protein CTR9 homolog.	WD repeat-containing protein 82.	0.445
LOC106562103	LOC106582800	ENSSSAP00000083183	ENSSSAP00000095326	RNA polymerase-associated protein CTR9 homolog.	WD repeat-containing protein 82-like isoform X1.	0.445
LOC106562103	LOC106611474	ENSSSAP00000083183	ENSSSAP00000070929	RNA polymerase-associated protein CTR9 homolog.	RNA polymerase-associated protein RTF1 homolog.	0.983
LOC106562103	WDR82	ENSSSAP00000083183	ENSSSAP00000117226	RNA polymerase-associated protein CTR9 homolog.	WD repeat-containing protein 82-like.	0.417
LOC106562103	rtf1	ENSSSAP00000083183	ENSSSAP00000000101	RNA polymerase-associated protein CTR9 homolog.	RNA polymerase-associated protein RTF1 homolog isoform X1.	0.983
LOC106565976	LOC106562103	ENSSSAP00000029960	ENSSSAP00000083183	WD repeat-containing protein 82.	RNA polymerase-associated protein CTR9 homolog.	0.445
LOC106565976	LOC106582800	ENSSSAP00000029960	ENSSSAP00000095326	WD repeat-containing protein 82.	WD repeat-containing protein 82-like isoform X1.	0.900
LOC106565976	WDR82	ENSSSAP00000029960	ENSSSAP00000117226	WD repeat-containing protein 82.	WD repeat-containing protein 82-like.	0.902
LOC106565976	ctr9	ENSSSAP00000029960	ENSSSAP00000095524	WD repeat-containing protein 82.	RNA polymerase-associated protein CTR9 homolog.	0.445
LOC106566364	LOC106588897	ENSSSAP00000032570	ENSSSAP00000045023	Nuclear transcription factor Y subunit alpha-like isoform X1.	Nuclear transcription factor Y subunit gamma-like isoform X2.	0.975
LOC106566364	nfyc	ENSSSAP00000032570	ENSSSAP00000064902	Nuclear transcription factor Y subunit alpha-like isoform X1.	Nuclear transcription factor Y subunit gamma isoform X1.	0.975
LOC106582800	LOC106562103	ENSSSAP00000095326	ENSSSAP00000083183	WD repeat-containing protein 82-like isoform X1.	RNA polymerase-associated protein CTR9 homolog.	0.445
LOC106582800	LOC106565976	ENSSSAP00000095326	ENSSSAP00000029960	WD repeat-containing protein 82-like isoform X1.	WD repeat-containing protein 82.	0.900
LOC106582800	WDR82	ENSSSAP00000095326	ENSSSAP00000117226	WD repeat-containing protein 82-like isoform X1.	WD repeat-containing protein 82-like.	0.901
LOC106582800	ctr9	ENSSSAP00000095326	ENSSSAP00000095524	WD repeat-containing protein 82-like isoform X1.	RNA polymerase-associated protein CTR9 homolog.	0.445
LOC106583083	LOC106588897	ENSSSAP00000017805	ENSSSAP00000045023	Nuclear transcription factor Y subunit alpha-like isoform X1.	Nuclear transcription factor Y subunit gamma-like isoform X2.	0.991
LOC106583083	nfyc	ENSSSAP00000017805	ENSSSAP00000064902	Nuclear transcription factor Y subunit alpha-like isoform X1.	Nuclear transcription factor Y subunit gamma isoform X1.	0.991
LOC106588897	LOC106566364	ENSSSAP00000045023	ENSSSAP00000032570	Nuclear transcription factor Y subunit gamma-like isoform X2.	Nuclear transcription factor Y subunit alpha-like isoform X1.	0.975
LOC106588897	LOC106583083	ENSSSAP00000045023	ENSSSAP00000017805	Nuclear transcription factor Y subunit gamma-like isoform X2.	Nuclear transcription factor Y subunit alpha-like isoform X1.	0.991
LOC106588897	nfya	ENSSSAP00000045023	ENSSSAP00000088724	Nuclear transcription factor Y subunit gamma-like isoform X2.	Nuclear transcription factor Y subunit alpha.	0.988