14 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	lmnb1	lamin-B1; Belongs to the intermediate filament family. (588 aa)
	cl011	CL011 protein. (709 aa)
	LOC106576392	Protein asunder homolog isoform X2. (716 aa)
	LMNA	lamin-A-like; Belongs to the intermediate filament family. (670 aa)
	LOC106569771	lamin-A-like; Belongs to the intermediate filament family. (634 aa)
	LOC106560500	torsin-1A-interacting protein 2-like isoform X1. (542 aa)
	LOC106560502	torsin-1A-interacting protein 2-like. (620 aa)
	lmnb2	lamin-B2; Belongs to the intermediate filament family. (589 aa)
	LOC106562715	lamin-L(III)-like isoform X2; Belongs to the intermediate filament family. (585 aa)
	LOC106560825	Nuclear transport factor 2. (137 aa)
	LOC106560825-2	Nuclear transport factor 2. (127 aa)
	LOC106563918	Nuclear pore complex protein Nup155-like isoform X1. (1340 aa)
	LOC106580679	lamin-A-like; Belongs to the intermediate filament family. (676 aa)
	nup54	Nucleoporin p54. (534 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LMNA	LOC106560500	ENSSSAP00000019524	ENSSSAP00000041253	lamin-A-like; Belongs to the intermediate filament family.	torsin-1A-interacting protein 2-like isoform X1.	0.490
LMNA	LOC106560502	ENSSSAP00000019524	ENSSSAP00000041272	lamin-A-like; Belongs to the intermediate filament family.	torsin-1A-interacting protein 2-like.	0.490
LMNA	lmnb1	ENSSSAP00000019524	ENSSSAP00000028147	lamin-A-like; Belongs to the intermediate filament family.	lamin-B1; Belongs to the intermediate filament family.	0.495
LOC106560500	LMNA	ENSSSAP00000041253	ENSSSAP00000019524	torsin-1A-interacting protein 2-like isoform X1.	lamin-A-like; Belongs to the intermediate filament family.	0.490
LOC106560500	LOC106562715	ENSSSAP00000041253	ENSSSAP00000043570	torsin-1A-interacting protein 2-like isoform X1.	lamin-L(III)-like isoform X2; Belongs to the intermediate filament family.	0.490
LOC106560500	LOC106569771	ENSSSAP00000041253	ENSSSAP00000036482	torsin-1A-interacting protein 2-like isoform X1.	lamin-A-like; Belongs to the intermediate filament family.	0.490
LOC106560500	LOC106580679	ENSSSAP00000041253	ENSSSAP00000093884	torsin-1A-interacting protein 2-like isoform X1.	lamin-A-like; Belongs to the intermediate filament family.	0.490
LOC106560500	lmnb1	ENSSSAP00000041253	ENSSSAP00000028147	torsin-1A-interacting protein 2-like isoform X1.	lamin-B1; Belongs to the intermediate filament family.	0.490
LOC106560500	lmnb2	ENSSSAP00000041253	ENSSSAP00000043235	torsin-1A-interacting protein 2-like isoform X1.	lamin-B2; Belongs to the intermediate filament family.	0.490
LOC106560502	LMNA	ENSSSAP00000041272	ENSSSAP00000019524	torsin-1A-interacting protein 2-like.	lamin-A-like; Belongs to the intermediate filament family.	0.490
LOC106560502	LOC106562715	ENSSSAP00000041272	ENSSSAP00000043570	torsin-1A-interacting protein 2-like.	lamin-L(III)-like isoform X2; Belongs to the intermediate filament family.	0.490
LOC106560502	LOC106569771	ENSSSAP00000041272	ENSSSAP00000036482	torsin-1A-interacting protein 2-like.	lamin-A-like; Belongs to the intermediate filament family.	0.490
LOC106560502	LOC106580679	ENSSSAP00000041272	ENSSSAP00000093884	torsin-1A-interacting protein 2-like.	lamin-A-like; Belongs to the intermediate filament family.	0.490
LOC106560502	lmnb1	ENSSSAP00000041272	ENSSSAP00000028147	torsin-1A-interacting protein 2-like.	lamin-B1; Belongs to the intermediate filament family.	0.490
LOC106560502	lmnb2	ENSSSAP00000041272	ENSSSAP00000043235	torsin-1A-interacting protein 2-like.	lamin-B2; Belongs to the intermediate filament family.	0.490
LOC106560825	nup54	ENSSSAP00000078537	ENSSSAP00000027479	Nuclear transport factor 2.	Nucleoporin p54.	0.638
LOC106560825-2	nup54	ENSSSAP00000080432	ENSSSAP00000027479	Nuclear transport factor 2.	Nucleoporin p54.	0.659
LOC106562715	LOC106560500	ENSSSAP00000043570	ENSSSAP00000041253	lamin-L(III)-like isoform X2; Belongs to the intermediate filament family.	torsin-1A-interacting protein 2-like isoform X1.	0.490
LOC106562715	LOC106560502	ENSSSAP00000043570	ENSSSAP00000041272	lamin-L(III)-like isoform X2; Belongs to the intermediate filament family.	torsin-1A-interacting protein 2-like.	0.490
LOC106563918	lmnb2	ENSSSAP00000083013	ENSSSAP00000043235	Nuclear pore complex protein Nup155-like isoform X1.	lamin-B2; Belongs to the intermediate filament family.	0.444