6 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pih1d1	PIH1 domain-containing protein 1. (268 aa)
	pih1d2	PIH1 domain-containing protein 2 isoform X1. (326 aa)
	LOC106583210	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (456 aa)
	LOC106581157	PIH1 domain-containing protein 2-like. (287 aa)
	ruvbl2	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (511 aa)
	ruvb1	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (456 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106581157	LOC106583210	ENSSSAP00000076481	ENSSSAP00000084297	PIH1 domain-containing protein 2-like.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.947
LOC106581157	pih1d1	ENSSSAP00000076481	ENSSSAP00000017864	PIH1 domain-containing protein 2-like.	PIH1 domain-containing protein 1.	0.597
LOC106581157	ruvb1	ENSSSAP00000076481	ENSSSAP00000038358	PIH1 domain-containing protein 2-like.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.947
LOC106581157	ruvbl2	ENSSSAP00000076481	ENSSSAP00000044206	PIH1 domain-containing protein 2-like.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.964
LOC106583210	LOC106581157	ENSSSAP00000084297	ENSSSAP00000076481	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	PIH1 domain-containing protein 2-like.	0.947
LOC106583210	pih1d1	ENSSSAP00000084297	ENSSSAP00000017864	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	PIH1 domain-containing protein 1.	0.984
LOC106583210	pih1d2	ENSSSAP00000084297	ENSSSAP00000081951	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	PIH1 domain-containing protein 2 isoform X1.	0.947
LOC106583210	ruvb1	ENSSSAP00000084297	ENSSSAP00000038358	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.900
LOC106583210	ruvbl2	ENSSSAP00000084297	ENSSSAP00000044206	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.999
pih1d1	LOC106581157	ENSSSAP00000017864	ENSSSAP00000076481	PIH1 domain-containing protein 1.	PIH1 domain-containing protein 2-like.	0.597
pih1d1	LOC106583210	ENSSSAP00000017864	ENSSSAP00000084297	PIH1 domain-containing protein 1.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.984
pih1d1	pih1d2	ENSSSAP00000017864	ENSSSAP00000081951	PIH1 domain-containing protein 1.	PIH1 domain-containing protein 2 isoform X1.	0.597
pih1d1	ruvb1	ENSSSAP00000017864	ENSSSAP00000038358	PIH1 domain-containing protein 1.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.984
pih1d1	ruvbl2	ENSSSAP00000017864	ENSSSAP00000044206	PIH1 domain-containing protein 1.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.998
pih1d2	LOC106583210	ENSSSAP00000081951	ENSSSAP00000084297	PIH1 domain-containing protein 2 isoform X1.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.947
pih1d2	pih1d1	ENSSSAP00000081951	ENSSSAP00000017864	PIH1 domain-containing protein 2 isoform X1.	PIH1 domain-containing protein 1.	0.597
pih1d2	ruvb1	ENSSSAP00000081951	ENSSSAP00000038358	PIH1 domain-containing protein 2 isoform X1.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.947
pih1d2	ruvbl2	ENSSSAP00000081951	ENSSSAP00000044206	PIH1 domain-containing protein 2 isoform X1.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.964
ruvb1	LOC106581157	ENSSSAP00000038358	ENSSSAP00000076481	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	PIH1 domain-containing protein 2-like.	0.947
ruvb1	LOC106583210	ENSSSAP00000038358	ENSSSAP00000084297	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.900