26 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mlh1	DNA mismatch repair protein Mlh1. (729 aa)
	rad51	DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (340 aa)
	knl1	Protein CASC5. (1848 aa)
	msh6	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1386 aa)
	rad51d	DNA repair protein RAD51 homolog 4. (336 aa)
	xrcc3	DNA repair protein XRCC3. (371 aa)
	LOC106584876	Uncharacterized protein LOC106584876. (1240 aa)
	smc6	Structural maintenance of chromosomes protein 6 isoform X1. (1090 aa)
	LOC106592399	mutS protein homolog 5-like isoform X1. (165 aa)
	dmc1	Meiotic recombination protein DMC1/LIM15 homolog isoform X2; Belongs to the RecA family. (337 aa)
	msh4	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (906 aa)
	ENSSSAP00000017215	annotation not available (115 aa)
	ENSSSAP00000011757	annotation not available (274 aa)
	LOC106607888	DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (339 aa)
	LOC106605957	mutS protein homolog 5-like. (154 aa)
	ENSSSAP00000001213	annotation not available (110 aa)
	mlh3	DNA mismatch repair protein Mlh3 isoform X2. (1207 aa)
	pms2	Mismatch repair endonuclease PMS2 isoform X1. (911 aa)
	pms1	PMS1 protein homolog 1 isoform X2. (914 aa)
	LOC106593957	mutS protein homolog 5-like. (476 aa)
	rad50	DNA repair protein RAD50. (1316 aa)
	rad51b	DNA repair protein RAD51 homolog 2 isoform X1. (418 aa)
	msh2	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (928 aa)
	XRCC2	DNA repair protein XRCC2-like. (307 aa)
	LOC106611344	Structural maintenance of chromosomes protein 6-like. (1102 aa)
	rad51c	DNA repair protein RAD51 homolog 3. (400 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000001213	ENSSSAP00000011757	ENSSSAP00000001213	ENSSSAP00000011757	annotation not available	annotation not available	0.953
ENSSSAP00000001213	ENSSSAP00000017215	ENSSSAP00000001213	ENSSSAP00000017215	annotation not available	annotation not available	0.677
ENSSSAP00000001213	LOC106584876	ENSSSAP00000001213	ENSSSAP00000029848	annotation not available	Uncharacterized protein LOC106584876.	0.954
ENSSSAP00000001213	LOC106592399	ENSSSAP00000001213	ENSSSAP00000024229	annotation not available	mutS protein homolog 5-like isoform X1.	0.943
ENSSSAP00000001213	LOC106593957	ENSSSAP00000001213	ENSSSAP00000065771	annotation not available	mutS protein homolog 5-like.	0.943
ENSSSAP00000001213	LOC106605957	ENSSSAP00000001213	ENSSSAP00000005759	annotation not available	mutS protein homolog 5-like.	0.943
ENSSSAP00000001213	LOC106607888	ENSSSAP00000001213	ENSSSAP00000005863	annotation not available	DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...]	0.684
ENSSSAP00000001213	XRCC2	ENSSSAP00000001213	ENSSSAP00000098240	annotation not available	DNA repair protein XRCC2-like.	0.527
ENSSSAP00000001213	dmc1	ENSSSAP00000001213	ENSSSAP00000023876	annotation not available	Meiotic recombination protein DMC1/LIM15 homolog isoform X2; Belongs to the RecA family.	0.565
ENSSSAP00000001213	knl1	ENSSSAP00000001213	ENSSSAP00000041765	annotation not available	Protein CASC5.	0.565
ENSSSAP00000001213	mlh1	ENSSSAP00000001213	ENSSSAP00000119639	annotation not available	DNA mismatch repair protein Mlh1.	0.997
ENSSSAP00000001213	mlh3	ENSSSAP00000001213	ENSSSAP00000060993	annotation not available	DNA mismatch repair protein Mlh3 isoform X2.	0.667
ENSSSAP00000001213	msh2	ENSSSAP00000001213	ENSSSAP00000099762	annotation not available	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.995
ENSSSAP00000001213	msh4	ENSSSAP00000001213	ENSSSAP00000017469	annotation not available	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.953
ENSSSAP00000001213	msh6	ENSSSAP00000001213	ENSSSAP00000040921	annotation not available	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.995
ENSSSAP00000001213	pms1	ENSSSAP00000001213	ENSSSAP00000049332	annotation not available	PMS1 protein homolog 1 isoform X2.	0.688
ENSSSAP00000001213	rad50	ENSSSAP00000001213	ENSSSAP00000101925	annotation not available	DNA repair protein RAD50.	0.598
ENSSSAP00000001213	rad51	ENSSSAP00000001213	ENSSSAP00000042073	annotation not available	DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...]	0.684
ENSSSAP00000001213	rad51b	ENSSSAP00000001213	ENSSSAP00000100955	annotation not available	DNA repair protein RAD51 homolog 2 isoform X1.	0.621
ENSSSAP00000001213	rad51c	ENSSSAP00000001213	ENSSSAP00000071867	annotation not available	DNA repair protein RAD51 homolog 3.	0.677