23 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pink1	Serine/threonine-protein kinase PINK1, mitochondrial. (576 aa)
	LOC106566262	Interleukin-10-like. (192 aa)
	LOC100136512	Interleukin-10. (300 aa)
	LOC100380649	Hamartin isoform X3. (1273 aa)
	LOC106604686	Cystine/glutamate transporter-like isoform X2. (522 aa)
	LOC106565454	Hamartin-like. (1271 aa)
	IL-10	Interleukin-10-like. (123 aa)
	park2	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily. (460 aa)
	GFER	Sulfhydryl oxidase. (189 aa)
	LOC106593769	F-box only protein 7-like isoform X1. (322 aa)
	ENSSSAP00000060471	annotation not available (89 aa)
	LOC106571501	Nuclear receptor coactivator 7-like isoform X2. (812 aa)
	LOC106579269	Nuclear receptor coactivator 7-like isoform X3. (224 aa)
	oxr1-2	Oxidation resistance protein 1-like. (839 aa)
	oxr1	Oxidation resistance protein 1 isoform X1. (963 aa)
	ENSSSAP00000027758	annotation not available (131 aa)
	ENSSSAP00000027103	Growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae). (194 aa)
	LOC106594412	F-box only protein 7-like. (238 aa)
	LOC106609505	Cystine/glutamate transporter-like. (528 aa)
	tsc1	Hamartin isoform X2. (1227 aa)
	ENSSSAP00000017583	Si:ch73-352p4.8. (449 aa)
	ENSSSAP00000016295	annotation not available (653 aa)
	LOC106611782	Cystine/glutamate transporter-like. (550 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000060471	LOC100380649	ENSSSAP00000060471	ENSSSAP00000077626	annotation not available	Hamartin isoform X3.	0.460
ENSSSAP00000060471	LOC106565454	ENSSSAP00000060471	ENSSSAP00000069696	annotation not available	Hamartin-like.	0.460
ENSSSAP00000060471	LOC106593769	ENSSSAP00000060471	ENSSSAP00000065571	annotation not available	F-box only protein 7-like isoform X1.	0.550
ENSSSAP00000060471	LOC106594412	ENSSSAP00000060471	ENSSSAP00000024084	annotation not available	F-box only protein 7-like.	0.550
ENSSSAP00000060471	pink1	ENSSSAP00000060471	ENSSSAP00000099010	annotation not available	Serine/threonine-protein kinase PINK1, mitochondrial.	0.996
ENSSSAP00000060471	tsc1	ENSSSAP00000060471	ENSSSAP00000019365	annotation not available	Hamartin isoform X2.	0.460
IL-10	LOC100136512	ENSSSAP00000068333	ENSSSAP00000080196	Interleukin-10-like.	Interleukin-10.	0.900
LOC100136512	IL-10	ENSSSAP00000080196	ENSSSAP00000068333	Interleukin-10.	Interleukin-10-like.	0.900
LOC100380649	ENSSSAP00000060471	ENSSSAP00000077626	ENSSSAP00000060471	Hamartin isoform X3.	annotation not available	0.460
LOC100380649	LOC106565454	ENSSSAP00000077626	ENSSSAP00000069696	Hamartin isoform X3.	Hamartin-like.	0.901
LOC100380649	park2	ENSSSAP00000077626	ENSSSAP00000066936	Hamartin isoform X3.	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	0.460
LOC100380649	pink1	ENSSSAP00000077626	ENSSSAP00000099010	Hamartin isoform X3.	Serine/threonine-protein kinase PINK1, mitochondrial.	0.709
LOC100380649	tsc1	ENSSSAP00000077626	ENSSSAP00000019365	Hamartin isoform X3.	Hamartin isoform X2.	0.902
LOC106565454	ENSSSAP00000060471	ENSSSAP00000069696	ENSSSAP00000060471	Hamartin-like.	annotation not available	0.460
LOC106565454	LOC100380649	ENSSSAP00000069696	ENSSSAP00000077626	Hamartin-like.	Hamartin isoform X3.	0.901
LOC106565454	park2	ENSSSAP00000069696	ENSSSAP00000066936	Hamartin-like.	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	0.460
LOC106565454	pink1	ENSSSAP00000069696	ENSSSAP00000099010	Hamartin-like.	Serine/threonine-protein kinase PINK1, mitochondrial.	0.709
LOC106565454	tsc1	ENSSSAP00000069696	ENSSSAP00000019365	Hamartin-like.	Hamartin isoform X2.	0.902
LOC106593769	ENSSSAP00000060471	ENSSSAP00000065571	ENSSSAP00000060471	F-box only protein 7-like isoform X1.	annotation not available	0.550
LOC106593769	park2	ENSSSAP00000065571	ENSSSAP00000066936	F-box only protein 7-like isoform X1.	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	0.550