13 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106604510	NAD-dependent protein deacetylase sirtuin-1-like isoform X2. (713 aa)
	LOC106572208	Nuclease-sensitive element-binding protein 1-like isoform X1. (379 aa)
	sirt1	NAD-dependent protein deacetylase sirtuin-1. (783 aa)
	LOC106565999	High mobility group protein HMGI-C-like. (87 aa)
	YBX1	Y-box binding protein-2 isoform X2. (322 aa)
	ENSSSAP00000085653	annotation not available (82 aa)
	LOC106613917	Fizzy-related protein homolog isoform X1. (494 aa)
	ENSSSAP00000093039	F-box protein 5. (324 aa)
	LOC106569402	Fizzy-related protein homolog. (490 aa)
	ENSSSAP00000114968	annotation not available (273 aa)
	FZR1	Fizzy-related protein homolog. (495 aa)
	sirt6	NAD-dependent protein deacetylase sirtuin-6 isoform X1. (383 aa)
	LOC106599985	Fizzy-related protein homolog isoform X2. (495 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000093039	FZR1	ENSSSAP00000093039	ENSSSAP00000117528	F-box protein 5.	Fizzy-related protein homolog.	0.978
ENSSSAP00000093039	LOC106569402	ENSSSAP00000093039	ENSSSAP00000102515	F-box protein 5.	Fizzy-related protein homolog.	0.978
ENSSSAP00000093039	LOC106599985	ENSSSAP00000093039	ENSSSAP00000119832	F-box protein 5.	Fizzy-related protein homolog isoform X2.	0.978
ENSSSAP00000093039	LOC106613917	ENSSSAP00000093039	ENSSSAP00000089763	F-box protein 5.	Fizzy-related protein homolog isoform X1.	0.978
ENSSSAP00000114968	LOC106604510	ENSSSAP00000114968	ENSSSAP00000004875	annotation not available	NAD-dependent protein deacetylase sirtuin-1-like isoform X2.	0.606
ENSSSAP00000114968	sirt1	ENSSSAP00000114968	ENSSSAP00000032495	annotation not available	NAD-dependent protein deacetylase sirtuin-1.	0.606
FZR1	ENSSSAP00000093039	ENSSSAP00000117528	ENSSSAP00000093039	Fizzy-related protein homolog.	F-box protein 5.	0.978
LOC106569402	ENSSSAP00000093039	ENSSSAP00000102515	ENSSSAP00000093039	Fizzy-related protein homolog.	F-box protein 5.	0.978
LOC106599985	ENSSSAP00000093039	ENSSSAP00000119832	ENSSSAP00000093039	Fizzy-related protein homolog isoform X2.	F-box protein 5.	0.978
LOC106604510	ENSSSAP00000114968	ENSSSAP00000004875	ENSSSAP00000114968	NAD-dependent protein deacetylase sirtuin-1-like isoform X2.	annotation not available	0.606
LOC106604510	sirt1	ENSSSAP00000004875	ENSSSAP00000032495	NAD-dependent protein deacetylase sirtuin-1-like isoform X2.	NAD-dependent protein deacetylase sirtuin-1.	0.901
LOC106604510	sirt6	ENSSSAP00000004875	ENSSSAP00000118458	NAD-dependent protein deacetylase sirtuin-1-like isoform X2.	NAD-dependent protein deacetylase sirtuin-6 isoform X1.	0.718
LOC106613917	ENSSSAP00000093039	ENSSSAP00000089763	ENSSSAP00000093039	Fizzy-related protein homolog isoform X1.	F-box protein 5.	0.978
sirt1	ENSSSAP00000114968	ENSSSAP00000032495	ENSSSAP00000114968	NAD-dependent protein deacetylase sirtuin-1.	annotation not available	0.606
sirt1	LOC106604510	ENSSSAP00000032495	ENSSSAP00000004875	NAD-dependent protein deacetylase sirtuin-1.	NAD-dependent protein deacetylase sirtuin-1-like isoform X2.	0.901
sirt1	sirt6	ENSSSAP00000032495	ENSSSAP00000118458	NAD-dependent protein deacetylase sirtuin-1.	NAD-dependent protein deacetylase sirtuin-6 isoform X1.	0.719
sirt6	LOC106604510	ENSSSAP00000118458	ENSSSAP00000004875	NAD-dependent protein deacetylase sirtuin-6 isoform X1.	NAD-dependent protein deacetylase sirtuin-1-like isoform X2.	0.718
sirt6	sirt1	ENSSSAP00000118458	ENSSSAP00000032495	NAD-dependent protein deacetylase sirtuin-6 isoform X1.	NAD-dependent protein deacetylase sirtuin-1.	0.719