17 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106582882	GATA-binding factor 2-like isoform X2. (425 aa)
	LOC106609785	Nuclear-interacting partner of ALK-like. (435 aa)
	gdnf	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake. (265 aa)
	gata1	GATA-binding factor 1. (424 aa)
	LOC106609763	Nuclear-interacting partner of ALK-like isoform X1. (379 aa)
	LOC106570815	Interleukin-1. (263 aa)
	LOC106570975	Growth arrest-specific protein 1-like. (266 aa)
	LOC100136449	Interleukin-1. (260 aa)
	unc5b	Netrin receptor UNC5B. (946 aa)
	LOC106579527	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (488 aa)
	LOC106568186	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake. (259 aa)
	GAS1	Growth arrest-specific protein 1-like. (269 aa)
	LOC106589035	Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (667 aa)
	ENSSSAP00000108435	Growth arrest-specific 1b. (255 aa)
	LOC106589804	GDNF family receptor alpha-like. (533 aa)
	sgk3	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (487 aa)
	LOC106570353	Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (627 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GAS1	LOC106570975	ENSSSAP00000061270	ENSSSAP00000042290	Growth arrest-specific protein 1-like.	Growth arrest-specific protein 1-like.	0.904
LOC100136449	LOC106570815	ENSSSAP00000047024	ENSSSAP00000042105	Interleukin-1.	Interleukin-1.	0.901
LOC106568186	LOC106589804	ENSSSAP00000056933	ENSSSAP00000113999	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.	GDNF family receptor alpha-like.	0.859
LOC106570815	LOC100136449	ENSSSAP00000042105	ENSSSAP00000047024	Interleukin-1.	Interleukin-1.	0.901
LOC106570975	GAS1	ENSSSAP00000042290	ENSSSAP00000061270	Growth arrest-specific protein 1-like.	Growth arrest-specific protein 1-like.	0.904
LOC106589804	LOC106568186	ENSSSAP00000113999	ENSSSAP00000056933	GDNF family receptor alpha-like.	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.	0.859
LOC106589804	gdnf	ENSSSAP00000113999	ENSSSAP00000004251	GDNF family receptor alpha-like.	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.	0.859
gdnf	LOC106589804	ENSSSAP00000004251	ENSSSAP00000113999	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.	GDNF family receptor alpha-like.	0.859