27 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106611777	Ras-related protein Rab-33B-like. (241 aa)
	LOC106583720	Podocalyxin-like protein 2 isoform X3. (600 aa)
	sdc2a	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (209 aa)
	LOC106561936	Uncharacterized protein PB18E9.04c-like. (374 aa)
	LOC106572562	45 kDa calcium-binding protein. (363 aa)
	LOC106570046	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (212 aa)
	LOC106587093	Flocculation protein FLO11-like. (366 aa)
	mime	Mimecan precursor. (270 aa)
	LOC106566248	Mimecan-like. (275 aa)
	LOC106600559	Neurocan core protein-like. (1159 aa)
	rab33b	Ras-related protein Rab-33B. (243 aa)
	agrp1	Agouti related protein-1 isoform X1. (190 aa)
	LOC106567133	45 kDa calcium-binding protein-like. (363 aa)
	LOC106613725	Neurocan core protein-like. (1379 aa)
	LOC106583805	Mimecan-like. (426 aa)
	ENSSSAP00000065141	annotation not available (114 aa)
	ENSSSAP00000063096	annotation not available (546 aa)
	LOC106609038	Keratocan-like. (345 aa)
	LOC106606033	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (217 aa)
	ppil2	Peptidyl-prolyl cis-trans isomerase-like 2. (959 aa)
	ENSSSAP00000036656	annotation not available (711 aa)
	LOC106573899	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (281 aa)
	ncan	Neurocan core protein. (1440 aa)
	LOC106576462	Keratocan-like. (345 aa)
	ENSSSAP00000022417	annotation not available (546 aa)
	ENSSSAP00000021871	annotation not available (546 aa)
	LOC106569686	Neurocan core protein-like. (1277 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106566248	LOC106576462	ENSSSAP00000082552	ENSSSAP00000024730	Mimecan-like.	Keratocan-like.	0.757
LOC106566248	LOC106609038	ENSSSAP00000082552	ENSSSAP00000058281	Mimecan-like.	Keratocan-like.	0.757
LOC106576462	LOC106566248	ENSSSAP00000024730	ENSSSAP00000082552	Keratocan-like.	Mimecan-like.	0.757
LOC106576462	LOC106583805	ENSSSAP00000024730	ENSSSAP00000067825	Keratocan-like.	Mimecan-like.	0.757
LOC106576462	mime	ENSSSAP00000024730	ENSSSAP00000084357	Keratocan-like.	Mimecan precursor.	0.757
LOC106583805	LOC106576462	ENSSSAP00000067825	ENSSSAP00000024730	Mimecan-like.	Keratocan-like.	0.757
LOC106583805	LOC106609038	ENSSSAP00000067825	ENSSSAP00000058281	Mimecan-like.	Keratocan-like.	0.757
LOC106609038	LOC106566248	ENSSSAP00000058281	ENSSSAP00000082552	Keratocan-like.	Mimecan-like.	0.757
LOC106609038	LOC106583805	ENSSSAP00000058281	ENSSSAP00000067825	Keratocan-like.	Mimecan-like.	0.757
LOC106609038	mime	ENSSSAP00000058281	ENSSSAP00000084357	Keratocan-like.	Mimecan precursor.	0.757
LOC106611777	rab33b	ENSSSAP00000109033	ENSSSAP00000075527	Ras-related protein Rab-33B-like.	Ras-related protein Rab-33B.	0.900
mime	LOC106576462	ENSSSAP00000084357	ENSSSAP00000024730	Mimecan precursor.	Keratocan-like.	0.757
mime	LOC106609038	ENSSSAP00000084357	ENSSSAP00000058281	Mimecan precursor.	Keratocan-like.	0.757
rab33b	LOC106611777	ENSSSAP00000075527	ENSSSAP00000109033	Ras-related protein Rab-33B.	Ras-related protein Rab-33B-like.	0.900