9 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106603888	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily. (323 aa)
	LOC106612126	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily. (389 aa)
	il6ra	Interleukin-6 receptor subunit alpha isoform X1. (818 aa)
	ENSSSAP00000065213	annotation not available (132 aa)
	ENSSSAP00000069053	annotation not available (624 aa)
	il18	Interleukin-18. (199 aa)
	LOC106604286	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily. (351 aa)
	LOC106567437	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily. (320 aa)
	LOC106607975	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily. (332 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000065213	LOC106604286	ENSSSAP00000065213	ENSSSAP00000085341	annotation not available	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily.	0.505
ENSSSAP00000065213	LOC106612126	ENSSSAP00000065213	ENSSSAP00000034690	annotation not available	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily.	0.505
LOC106567437	il18	ENSSSAP00000087207	ENSSSAP00000084336	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily.	Interleukin-18.	0.460
LOC106604286	ENSSSAP00000065213	ENSSSAP00000085341	ENSSSAP00000065213	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily.	annotation not available	0.505
LOC106604286	il18	ENSSSAP00000085341	ENSSSAP00000084336	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily.	Interleukin-18.	0.505
LOC106612126	ENSSSAP00000065213	ENSSSAP00000034690	ENSSSAP00000065213	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily.	annotation not available	0.505
LOC106612126	il18	ENSSSAP00000034690	ENSSSAP00000084336	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily.	Interleukin-18.	0.505
il18	LOC106567437	ENSSSAP00000084336	ENSSSAP00000087207	Interleukin-18.	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily.	0.460
il18	LOC106604286	ENSSSAP00000084336	ENSSSAP00000085341	Interleukin-18.	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily.	0.505
il18	LOC106612126	ENSSSAP00000084336	ENSSSAP00000034690	Interleukin-18.	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily.	0.505