39 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106585548	U5 small nuclear ribonucleoprotein 200 kDa helicase. (2137 aa)
	LOC106601610	RING finger protein 113A-like. (337 aa)
	LOC106600666	Serine/arginine repetitive matrix protein 2-like. (1148 aa)
	ENSSSAP00000003490	Serine/arginine repetitive matrix protein 2-like. (210 aa)
	mfap1	Microfibrillar-associated protein 1. (445 aa)
	LOC106604632	WD40 repeat-containing protein SMU1. (555 aa)
	SNIP1	Smad nuclear-interacting protein 1-like. (390 aa)
	ENSSSAP00000027255	annotation not available (90 aa)
	ube2j1	Ubiquitin-conjugating enzyme E2 J1. (322 aa)
	ENSSSAP00000031845	annotation not available (275 aa)
	LOC106567889	RNA-binding motif protein, X-linked 2-like isoform X2. (310 aa)
	ENSSSAP00000032338	annotation not available (63 aa)
	LOC106571293	Ubiquitin-conjugating enzyme E2 J1-like isoform X2. (310 aa)
	LOC106605131	Smad nuclear-interacting protein 1-like. (395 aa)
	LOC106562262	Methenyltetrahydrofolate synthase domain-containing protein-like. (521 aa)
	LOC106608993	Splicing factor 3B subunit 2-like isoform X1. (900 aa)
	prpf38a	pre-mRNA processing factor 38A. (390 aa)
	ik	RED protein. (636 aa)
	LOC106611639	WD40 repeat-containing protein SMU1. (513 aa)
	ENSSSAP00000049834	annotation not available (93 aa)
	mthfsd	Methenyltetrahydrofolate synthase domain-containing protein isoform X1. (573 aa)
	sf3b3-2	Splicing factor 3B subunit 3. (1213 aa)
	rbmx2	RNA-binding motif protein, X-linked 2. (348 aa)
	LOC106592210	WW domain-binding protein 4-like. (404 aa)
	sf3b2	Splicing factor 3B subunit 2. (908 aa)
	ENSSSAP00000064904	DEAH (Asp-Glu-Ala-His) box polypeptide 16. (1032 aa)
	LOC106586461	pre-mRNA-splicing factor CWC22 homolog isoform X2. (1069 aa)
	LOC106582345	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X2. (1056 aa)
	LOC106600568	pre-mRNA-splicing factor 38B-like. (475 aa)
	LOC106569674	pre-mRNA-splicing factor 38B-like isoform X1. (497 aa)
	LOC106579886	U5 small nuclear ribonucleoprotein 200 kDa helicase-like. (2137 aa)
	sf3b3	Splicing factor 3B subunit 3. (107 aa)
	LOC106583906	Serine/arginine repetitive matrix protein 2-like isoform X1. (1247 aa)
	ENSSSAP00000097541	annotation not available (303 aa)
	cwc27	Peptidyl-prolyl cis-trans isomerase CWC27 homolog isoform X1. (484 aa)
	LOC106575454	WW domain-binding protein 4-like. (406 aa)
	LOC106582271	pre-mRNA-splicing factor CWC22 homolog. (1103 aa)
	pr38a	Pre-mRNA-splicing factor 38A. (308 aa)
	zmat2	Zinc finger matrin-type protein 2. (220 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000003490	ENSSSAP00000031845	ENSSSAP00000003490	ENSSSAP00000031845	Serine/arginine repetitive matrix protein 2-like.	annotation not available	0.888
ENSSSAP00000003490	ENSSSAP00000032338	ENSSSAP00000003490	ENSSSAP00000032338	Serine/arginine repetitive matrix protein 2-like.	annotation not available	0.876
ENSSSAP00000003490	ENSSSAP00000064904	ENSSSAP00000003490	ENSSSAP00000064904	Serine/arginine repetitive matrix protein 2-like.	DEAH (Asp-Glu-Ala-His) box polypeptide 16.	0.892
ENSSSAP00000003490	ENSSSAP00000097541	ENSSSAP00000003490	ENSSSAP00000097541	Serine/arginine repetitive matrix protein 2-like.	annotation not available	0.891
ENSSSAP00000003490	LOC106567889	ENSSSAP00000003490	ENSSSAP00000032285	Serine/arginine repetitive matrix protein 2-like.	RNA-binding motif protein, X-linked 2-like isoform X2.	0.876
ENSSSAP00000003490	LOC106579886	ENSSSAP00000003490	ENSSSAP00000082132	Serine/arginine repetitive matrix protein 2-like.	U5 small nuclear ribonucleoprotein 200 kDa helicase-like.	0.936
ENSSSAP00000003490	LOC106582271	ENSSSAP00000003490	ENSSSAP00000113051	Serine/arginine repetitive matrix protein 2-like.	pre-mRNA-splicing factor CWC22 homolog.	0.976
ENSSSAP00000003490	LOC106582345	ENSSSAP00000003490	ENSSSAP00000079972	Serine/arginine repetitive matrix protein 2-like.	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X2.	0.892
ENSSSAP00000003490	LOC106585548	ENSSSAP00000003490	ENSSSAP00000118816	Serine/arginine repetitive matrix protein 2-like.	U5 small nuclear ribonucleoprotein 200 kDa helicase.	0.936
ENSSSAP00000003490	LOC106586461	ENSSSAP00000003490	ENSSSAP00000072514	Serine/arginine repetitive matrix protein 2-like.	pre-mRNA-splicing factor CWC22 homolog isoform X2.	0.976
ENSSSAP00000003490	LOC106601610	ENSSSAP00000003490	ENSSSAP00000001988	Serine/arginine repetitive matrix protein 2-like.	RING finger protein 113A-like.	0.888
ENSSSAP00000003490	LOC106605131	ENSSSAP00000003490	ENSSSAP00000034815	Serine/arginine repetitive matrix protein 2-like.	Smad nuclear-interacting protein 1-like.	0.867
ENSSSAP00000003490	LOC106608993	ENSSSAP00000003490	ENSSSAP00000043370	Serine/arginine repetitive matrix protein 2-like.	Splicing factor 3B subunit 2-like isoform X1.	0.873
ENSSSAP00000003490	SNIP1	ENSSSAP00000003490	ENSSSAP00000026897	Serine/arginine repetitive matrix protein 2-like.	Smad nuclear-interacting protein 1-like.	0.867
ENSSSAP00000003490	cwc27	ENSSSAP00000003490	ENSSSAP00000099749	Serine/arginine repetitive matrix protein 2-like.	Peptidyl-prolyl cis-trans isomerase CWC27 homolog isoform X1.	0.891
ENSSSAP00000003490	ik	ENSSSAP00000003490	ENSSSAP00000045958	Serine/arginine repetitive matrix protein 2-like.	RED protein.	0.698
ENSSSAP00000003490	mfap1	ENSSSAP00000003490	ENSSSAP00000013692	Serine/arginine repetitive matrix protein 2-like.	Microfibrillar-associated protein 1.	0.774
ENSSSAP00000003490	pr38a	ENSSSAP00000003490	ENSSSAP00000113716	Serine/arginine repetitive matrix protein 2-like.	Pre-mRNA-splicing factor 38A.	0.732
ENSSSAP00000003490	prpf38a	ENSSSAP00000003490	ENSSSAP00000043947	Serine/arginine repetitive matrix protein 2-like.	pre-mRNA processing factor 38A.	0.732
ENSSSAP00000003490	rbmx2	ENSSSAP00000003490	ENSSSAP00000053726	Serine/arginine repetitive matrix protein 2-like.	RNA-binding motif protein, X-linked 2.	0.876