18 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106588319	Mothers against decapentaplegic homolog. (587 aa)
	LOC106580048	Mothers against decapentaplegic homolog. (467 aa)
	SMAD4	Mothers against decapentaplegic homolog. (552 aa)
	SMAD1-2	Mothers against decapentaplegic homolog. (481 aa)
	LOC106605446	Mothers against decapentaplegic homolog. (565 aa)
	smad4	Mothers against decapentaplegic homolog. (510 aa)
	smad6	Mothers against decapentaplegic homolog. (490 aa)
	LOC106569881	Mothers against decapentaplegic homolog. (589 aa)
	LOC106568180	Mothers against decapentaplegic homolog. (548 aa)
	smad5	Mothers against decapentaplegic homolog. (468 aa)
	LOC106568470	Mothers against decapentaplegic homolog. (377 aa)
	LOC106580167	Mothers against decapentaplegic homolog. (579 aa)
	smad1	Mothers against decapentaplegic homolog. (474 aa)
	LOC106585370	Mothers against decapentaplegic homolog. (464 aa)
	smad9	Mothers against decapentaplegic homolog. (467 aa)
	LOC106563534	Mothers against decapentaplegic homolog. (524 aa)
	LOC106561252	Mothers against decapentaplegic homolog. (377 aa)
	LOC106563948	Mothers against decapentaplegic homolog. (554 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106561252	LOC106563948	ENSSSAP00000002558	ENSSSAP00000001454	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.489
LOC106561252	LOC106568180	ENSSSAP00000002558	ENSSSAP00000070778	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.489
LOC106561252	LOC106569881	ENSSSAP00000002558	ENSSSAP00000092673	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.489
LOC106561252	LOC106580048	ENSSSAP00000002558	ENSSSAP00000114783	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.947
LOC106561252	LOC106580167	ENSSSAP00000002558	ENSSSAP00000042739	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.489
LOC106561252	LOC106585370	ENSSSAP00000002558	ENSSSAP00000040565	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.947
LOC106561252	LOC106588319	ENSSSAP00000002558	ENSSSAP00000061696	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.489
LOC106561252	LOC106605446	ENSSSAP00000002558	ENSSSAP00000102094	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.544
LOC106561252	SMAD1-2	ENSSSAP00000002558	ENSSSAP00000103653	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.842
LOC106561252	SMAD4	ENSSSAP00000002558	ENSSSAP00000104615	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.543
LOC106561252	smad1	ENSSSAP00000002558	ENSSSAP00000040852	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.842
LOC106561252	smad4	ENSSSAP00000002558	ENSSSAP00000101532	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.543
LOC106561252	smad5	ENSSSAP00000002558	ENSSSAP00000068218	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.842
LOC106561252	smad9	ENSSSAP00000002558	ENSSSAP00000016347	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.842
LOC106563534	LOC106563948	ENSSSAP00000010419	ENSSSAP00000001454	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.489
LOC106563534	LOC106568180	ENSSSAP00000010419	ENSSSAP00000070778	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.489
LOC106563534	LOC106569881	ENSSSAP00000010419	ENSSSAP00000092673	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.489
LOC106563534	LOC106580048	ENSSSAP00000010419	ENSSSAP00000114783	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.947
LOC106563534	LOC106580167	ENSSSAP00000010419	ENSSSAP00000042739	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.489
LOC106563534	LOC106585370	ENSSSAP00000010419	ENSSSAP00000040565	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.947