34 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106576788	DNA nucleotidylexotransferase; Template-independent DNA polymerase which catalyzes the random addition of deoxynucleoside 5'-triphosphate to the 3'-end of a DNA initiator. (511 aa)
	terf2ip	Telomeric repeat-binding factor 2-interacting protein 1. (611 aa)
	LOC106605998	Nibrin-like. (442 aa)
	parp1	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1030 aa)
	LOC106582088	Poly [ADP-ribose] polymerase. (2062 aa)
	LOC106605164	DNA repair protein XRCC1-like. (989 aa)
	lig3	DNA ligase. (1023 aa)
	LOC106586740	DNA repair protein REV1-like. (1613 aa)
	chd1l	chromodomain-helicase-DNA-binding protein 1-like. (982 aa)
	LOC106590185	DNA topoisomerase 2-binding protein 1-A-like. (1534 aa)
	LOC106582635	DNA repair protein XRCC1-like. (633 aa)
	slf1	Ankyrin repeat domain-containing protein 32 isoform X1. (896 aa)
	LOC106578660	DNA topoisomerase 2-binding protein 1-A-like isoform X1. (1446 aa)
	ect2	Protein ECT2 isoform X1. (1084 aa)
	LOC106584307	Protein ECT2-like isoform X1. (1012 aa)
	LOC106605322	DNA nucleotidylexotransferase; Template-independent DNA polymerase which catalyzes the random addition of deoxynucleoside 5'-triphosphate to the 3'-end of a DNA initiator. (510 aa)
	LOC106588593	RNA polymerase II subunit A C-terminal domain phosphatase-like isoform X1. (1037 aa)
	LOC106605400	Mediator of DNA damage checkpoint protein 1-like. (2157 aa)
	LOC106564589	DNA polymerase lambda-like; Belongs to the DNA polymerase type-X family. (565 aa)
	LOC106570222	RNA polymerase II subunit A C-terminal domain phosphatase-like isoform X1. (1043 aa)
	mcph1	Microcephalin isoform X1. (886 aa)
	LOC106588764	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (542 aa)
	lig4	DNA ligase. (927 aa)
	LOC106569276	DNA-directed DNA/RNA polymerase mu; Gap-filling polymerase involved in repair of DNA double- strand breaks by non-homologous end joining (NHEJ). Belongs to the DNA polymerase type-X family. (554 aa)
	LOC106589816	Microcephalin-like isoform X4. (473 aa)
	LOC106579625	Mediator of DNA damage checkpoint protein 1-like. (2327 aa)
	rev1	DNA repair protein REV1. (1451 aa)
	LOC106585655	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (584 aa)
	brca1	Breast cancer type 1 susceptibility protein isoform X2. (1567 aa)
	LOC106599330	PAX-interacting protein 1-like isoform X1. (1102 aa)
	LOC106576036	Protein DBF4 homolog A-like isoform X1. (673 aa)
	LOC106562517	Tumor suppressor p53-binding protein 1-like isoform X3. (1923 aa)
	pesc	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (584 aa)
	LOC106569237	PAX-interacting protein 1-like. (1153 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106562517	LOC106569237	ENSSSAP00000047292	ENSSSAP00000078672	Tumor suppressor p53-binding protein 1-like isoform X3.	PAX-interacting protein 1-like.	0.952
LOC106562517	LOC106578660	ENSSSAP00000047292	ENSSSAP00000095134	Tumor suppressor p53-binding protein 1-like isoform X3.	DNA topoisomerase 2-binding protein 1-A-like isoform X1.	0.961
LOC106562517	LOC106579625	ENSSSAP00000047292	ENSSSAP00000085078	Tumor suppressor p53-binding protein 1-like isoform X3.	Mediator of DNA damage checkpoint protein 1-like.	0.952
LOC106562517	LOC106582635	ENSSSAP00000047292	ENSSSAP00000083146	Tumor suppressor p53-binding protein 1-like isoform X3.	DNA repair protein XRCC1-like.	0.516
LOC106562517	LOC106589816	ENSSSAP00000047292	ENSSSAP00000018970	Tumor suppressor p53-binding protein 1-like isoform X3.	Microcephalin-like isoform X4.	0.771
LOC106562517	LOC106590185	ENSSSAP00000047292	ENSSSAP00000075930	Tumor suppressor p53-binding protein 1-like isoform X3.	DNA topoisomerase 2-binding protein 1-A-like.	0.961
LOC106562517	LOC106599330	ENSSSAP00000047292	ENSSSAP00000038957	Tumor suppressor p53-binding protein 1-like isoform X3.	PAX-interacting protein 1-like isoform X1.	0.952
LOC106562517	LOC106605164	ENSSSAP00000047292	ENSSSAP00000054789	Tumor suppressor p53-binding protein 1-like isoform X3.	DNA repair protein XRCC1-like.	0.516
LOC106562517	LOC106605400	ENSSSAP00000047292	ENSSSAP00000023890	Tumor suppressor p53-binding protein 1-like isoform X3.	Mediator of DNA damage checkpoint protein 1-like.	0.952
LOC106562517	brca1	ENSSSAP00000047292	ENSSSAP00000106017	Tumor suppressor p53-binding protein 1-like isoform X3.	Breast cancer type 1 susceptibility protein isoform X2.	0.972
LOC106562517	lig3	ENSSSAP00000047292	ENSSSAP00000058163	Tumor suppressor p53-binding protein 1-like isoform X3.	DNA ligase.	0.611
LOC106562517	lig4	ENSSSAP00000047292	ENSSSAP00000029249	Tumor suppressor p53-binding protein 1-like isoform X3.	DNA ligase.	0.711
LOC106562517	mcph1	ENSSSAP00000047292	ENSSSAP00000015619	Tumor suppressor p53-binding protein 1-like isoform X3.	Microcephalin isoform X1.	0.771
LOC106562517	parp1	ENSSSAP00000047292	ENSSSAP00000054008	Tumor suppressor p53-binding protein 1-like isoform X3.	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.	0.476
LOC106562517	slf1	ENSSSAP00000047292	ENSSSAP00000017769	Tumor suppressor p53-binding protein 1-like isoform X3.	Ankyrin repeat domain-containing protein 32 isoform X1.	0.961
LOC106564589	LOC106569276	ENSSSAP00000017593	ENSSSAP00000029929	DNA polymerase lambda-like; Belongs to the DNA polymerase type-X family.	DNA-directed DNA/RNA polymerase mu; Gap-filling polymerase involved in repair of DNA double- strand breaks by non-homologous end joining (NHEJ). Belongs to the DNA polymerase type-X family.	0.574
LOC106564589	LOC106576788	ENSSSAP00000017593	ENSSSAP00000076757	DNA polymerase lambda-like; Belongs to the DNA polymerase type-X family.	DNA nucleotidylexotransferase; Template-independent DNA polymerase which catalyzes the random addition of deoxynucleoside 5'-triphosphate to the 3'-end of a DNA initiator.	0.602
LOC106564589	LOC106582088	ENSSSAP00000017593	ENSSSAP00000054707	DNA polymerase lambda-like; Belongs to the DNA polymerase type-X family.	Poly [ADP-ribose] polymerase.	0.609
LOC106564589	LOC106582635	ENSSSAP00000017593	ENSSSAP00000083146	DNA polymerase lambda-like; Belongs to the DNA polymerase type-X family.	DNA repair protein XRCC1-like.	0.930
LOC106564589	LOC106586740	ENSSSAP00000017593	ENSSSAP00000061111	DNA polymerase lambda-like; Belongs to the DNA polymerase type-X family.	DNA repair protein REV1-like.	0.461