76 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106573450	semaphorin-3E-like isoform X1; Belongs to the semaphorin family. (804 aa)
	LOC106613040	semaphorin-4G-like; Belongs to the semaphorin family. (931 aa)
	LOC106605438	semaphorin-4A-like; Belongs to the semaphorin family. (737 aa)
	LOC106569872	semaphorin-4A-like isoform X1; Belongs to the semaphorin family. (831 aa)
	LOC106565257	plexin-B1-like isoform X2. (2331 aa)
	LOC106609650	Semaphorin-3aa-like; Belongs to the semaphorin family. (403 aa)
	PLXND1	plexin-D1-like. (1856 aa)
	LOC106576598	plexin-B2-like. (1859 aa)
	LOC106576426	semaphorin-3C-like; Belongs to the semaphorin family. (745 aa)
	LOC106562116	semaphorin-7A-like isoform X1; Belongs to the semaphorin family. (633 aa)
	LOC106605326	semaphorin-7A-like; Belongs to the semaphorin family. (640 aa)
	LOC106575804	semaphorin-5B-like isoform X3; Belongs to the semaphorin family. (635 aa)
	LOC106588355	semaphorin-6D-like isoform X1; Belongs to the semaphorin family. (1052 aa)
	plxna1	plexin-A1 isoform X2. (1895 aa)
	LOC106574866	semaphorin-5B-like. (340 aa)
	LOC106605335	semaphorin-6D-like isoform X1; Belongs to the semaphorin family. (1106 aa)
	sema3g	semaphorin-3G; Belongs to the semaphorin family. (772 aa)
	LOC106565756	Macrophage-stimulating protein receptor-like. (1378 aa)
	LOC106573451	Semaphorin-3ab-like; Belongs to the semaphorin family. (806 aa)
	LOC106602207	semaphorin-4F-like; Belongs to the semaphorin family. (708 aa)
	LOC106573120	Hepatocyte growth factor receptor-like. (1430 aa)
	LOC106573452	semaphorin-3D-like; Belongs to the semaphorin family. (807 aa)
	LOC106565988	semaphorin-3F-like isoform X1; Belongs to the semaphorin family. (808 aa)
	LOC106584474	plexin-B2-like. (1862 aa)
	LOC106609289	plexin-C1-like isoform X1. (1140 aa)
	sema4g	semaphorin-4G isoform X1; Belongs to the semaphorin family. (896 aa)
	LOC106565754	semaphorin-3F-like isoform X1; Belongs to the semaphorin family. (789 aa)
	LOC106587727	semaphorin-6D-like isoform X1; Belongs to the semaphorin family. (440 aa)
	LOC106560979	plexin-B2-like. (1864 aa)
	LOC106613204	semaphorin-4E-like; Belongs to the semaphorin family. (777 aa)
	LOC106588312	semaphorin-4A-like isoform X2; Belongs to the semaphorin family. (827 aa)
	SEMA6A	semaphorin-6A-like isoform X1; Belongs to the semaphorin family. (1012 aa)
	sema4d	semaphorin-4D isoform X1; Belongs to the semaphorin family. (920 aa)
	LOC106566214	semaphorin-3D-like; Belongs to the semaphorin family. (780 aa)
	LOC106578306	semaphorin-4G-like; Belongs to the semaphorin family. (889 aa)
	LOC106578059	semaphorin-4F-like; Belongs to the semaphorin family. (408 aa)
	PLXNA2	plexin-A2-like. (1906 aa)
	LOC106572278	LOW QUALITY PROTEIN: semaphorin-3B-like; Belongs to the semaphorin family. (819 aa)
	LOC106583586	plexin-A1-like isoform X2. (1907 aa)
	LOC106572304	Semaphorin-3ab-like; Belongs to the semaphorin family. (740 aa)
	LOC106613811	semaphorin-4E-like; Belongs to the semaphorin family. (794 aa)
	LOC106582756	Macrophage-stimulating protein receptor-like. (1374 aa)
	LOC106572382	semaphorin-3F-like isoform X1; Belongs to the semaphorin family. (769 aa)
	LOC106569916	semaphorin-6D-like isoform X1; Belongs to the semaphorin family. (1047 aa)
	LOC106580978	semaphorin-6D-like isoform X2; Belongs to the semaphorin family. (1106 aa)
	LOC106586418	semaphorin-5B-like isoform X2. (1107 aa)
	LOC106566976	plexin-B1-like. (2252 aa)
	LOC106561553	Hepatocyte growth factor receptor-like. (1423 aa)
	LOC106577257	semaphorin-4G-like; Belongs to the semaphorin family. (1081 aa)
	LOC106583629	plexin-B1-like isoform X1. (2242 aa)
	LOC106580489	semaphorin-4C-like isoform X2; Belongs to the semaphorin family. (864 aa)
	LOC106566493	Plexin A3-like isoform X2. (1912 aa)
	LOC106567158	plexin-A2-like. (1913 aa)
	LOC106572368	plexin-A1-like isoform X2. (1900 aa)
	LOC106587207	semaphorin-7A-like; Belongs to the semaphorin family. (631 aa)
	LOC106584391	semaphorin-6B-like isoform X4; Belongs to the semaphorin family. (909 aa)
	LOC106562535	semaphorin-6D-like isoform X1; Belongs to the semaphorin family. (1266 aa)
	LOC106584397	semaphorin-4E-like; Belongs to the semaphorin family. (816 aa)
	LOC106572747	plexin-B1-like isoform X1. (2189 aa)
	LOC106572068	Plexin A3 isoform X2. (1913 aa)
	LOC106566890	plexin-A1-like isoform X4. (1884 aa)
	LOC106572221	semaphorin-3F-like; Belongs to the semaphorin family. (786 aa)
	LOC106566791	Semaphorin-3ab-like isoform X1; Belongs to the semaphorin family. (744 aa)
	SEMA6A-2	semaphorin-6A-like isoform X1; Belongs to the semaphorin family. (1019 aa)
	LOC106561177	semaphorin-4B-like; Belongs to the semaphorin family. (849 aa)
	LOC106561202	semaphorin-3D-like; Belongs to the semaphorin family. (818 aa)
	LOC106561204	semaphorin-3E-like isoform X1; Belongs to the semaphorin family. (862 aa)
	PLXND1-2	plexin-D1-like. (1838 aa)
	LOC106578437	semaphorin-5A-like. (1084 aa)
	sema5b	semaphorin-5B isoform X3. (1111 aa)
	LOC106569521	semaphorin-4E-like; Belongs to the semaphorin family. (778 aa)
	plxna2	plexin-A2. (1909 aa)
	LOC106600027	semaphorin-6B-like isoform X1; Belongs to the semaphorin family. (910 aa)
	LOC106585097	semaphorin-4C-like; Belongs to the semaphorin family. (866 aa)
	LOC106582865	semaphorin-3F-like isoform X1; Belongs to the semaphorin family. (799 aa)
	LOC106582868	Macrophage-stimulating protein receptor-like. (1378 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106560979	LOC106561177	ENSSSAP00000057894	ENSSSAP00000112292	plexin-B2-like.	semaphorin-4B-like; Belongs to the semaphorin family.	0.517
LOC106560979	LOC106561204	ENSSSAP00000057894	ENSSSAP00000113678	plexin-B2-like.	semaphorin-3E-like isoform X1; Belongs to the semaphorin family.	0.559
LOC106560979	LOC106561553	ENSSSAP00000057894	ENSSSAP00000092894	plexin-B2-like.	Hepatocyte growth factor receptor-like.	0.604
LOC106560979	LOC106562116	ENSSSAP00000057894	ENSSSAP00000019499	plexin-B2-like.	semaphorin-7A-like isoform X1; Belongs to the semaphorin family.	0.586
LOC106560979	LOC106562535	ENSSSAP00000057894	ENSSSAP00000097864	plexin-B2-like.	semaphorin-6D-like isoform X1; Belongs to the semaphorin family.	0.470
LOC106560979	LOC106565756	ENSSSAP00000057894	ENSSSAP00000037683	plexin-B2-like.	Macrophage-stimulating protein receptor-like.	0.604
LOC106560979	LOC106569521	ENSSSAP00000057894	ENSSSAP00000114892	plexin-B2-like.	semaphorin-4E-like; Belongs to the semaphorin family.	0.758
LOC106560979	LOC106569872	ENSSSAP00000057894	ENSSSAP00000009002	plexin-B2-like.	semaphorin-4A-like isoform X1; Belongs to the semaphorin family.	0.517
LOC106560979	LOC106569916	ENSSSAP00000057894	ENSSSAP00000083448	plexin-B2-like.	semaphorin-6D-like isoform X1; Belongs to the semaphorin family.	0.470
LOC106560979	LOC106572278	ENSSSAP00000057894	ENSSSAP00000076908	plexin-B2-like.	LOW QUALITY PROTEIN: semaphorin-3B-like; Belongs to the semaphorin family.	0.546
LOC106560979	LOC106573120	ENSSSAP00000057894	ENSSSAP00000042297	plexin-B2-like.	Hepatocyte growth factor receptor-like.	0.604
LOC106560979	LOC106573450	ENSSSAP00000057894	ENSSSAP00000024472	plexin-B2-like.	semaphorin-3E-like isoform X1; Belongs to the semaphorin family.	0.559
LOC106560979	LOC106573451	ENSSSAP00000057894	ENSSSAP00000040981	plexin-B2-like.	Semaphorin-3ab-like; Belongs to the semaphorin family.	0.546
LOC106560979	LOC106574866	ENSSSAP00000057894	ENSSSAP00000035351	plexin-B2-like.	semaphorin-5B-like.	0.638
LOC106560979	LOC106575804	ENSSSAP00000057894	ENSSSAP00000024378	plexin-B2-like.	semaphorin-5B-like isoform X3; Belongs to the semaphorin family.	0.638
LOC106560979	LOC106576426	ENSSSAP00000057894	ENSSSAP00000017303	plexin-B2-like.	semaphorin-3C-like; Belongs to the semaphorin family.	0.419
LOC106560979	LOC106577257	ENSSSAP00000057894	ENSSSAP00000093949	plexin-B2-like.	semaphorin-4G-like; Belongs to the semaphorin family.	0.477
LOC106560979	LOC106578059	ENSSSAP00000057894	ENSSSAP00000070421	plexin-B2-like.	semaphorin-4F-like; Belongs to the semaphorin family.	0.477
LOC106560979	LOC106578306	ENSSSAP00000057894	ENSSSAP00000070031	plexin-B2-like.	semaphorin-4G-like; Belongs to the semaphorin family.	0.477
LOC106560979	LOC106578437	ENSSSAP00000057894	ENSSSAP00000113927	plexin-B2-like.	semaphorin-5A-like.	0.638