13 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GNB4	Guanine nucleotide-binding protein subunit beta-4. (340 aa)
	LOC106561786	Guanine nucleotide-binding protein subunit beta-5-like. (402 aa)
	LOC106562494	Guanine nucleotide-binding protein subunit beta-5-like isoform X1. (365 aa)
	LOC106605091	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3-like isoform X2. (340 aa)
	LOC106565997	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like. (340 aa)
	LOC106582111	Chromatin assembly factor 1 subunit B-like. (625 aa)
	LOC106586634	Chromatin assembly factor 1 subunit B-like. (710 aa)
	LOC106571997	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 isoform X1. (340 aa)
	LOC106582769	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like. (340 aa)
	LOC106588420	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3-like. (342 aa)
	nle1	Notchless protein homolog 1 isoform X1. (493 aa)
	LOC106570161	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3-like. (338 aa)
	LOC106566880	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like. (340 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GNB4	LOC106561786	ENSSSAP00000005848	ENSSSAP00000029573	Guanine nucleotide-binding protein subunit beta-4.	Guanine nucleotide-binding protein subunit beta-5-like.	0.407
GNB4	LOC106562494	ENSSSAP00000005848	ENSSSAP00000030725	Guanine nucleotide-binding protein subunit beta-4.	Guanine nucleotide-binding protein subunit beta-5-like isoform X1.	0.415
LOC106561786	GNB4	ENSSSAP00000029573	ENSSSAP00000005848	Guanine nucleotide-binding protein subunit beta-5-like.	Guanine nucleotide-binding protein subunit beta-4.	0.407
LOC106561786	LOC106565997	ENSSSAP00000029573	ENSSSAP00000035466	Guanine nucleotide-binding protein subunit beta-5-like.	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like.	0.407
LOC106561786	LOC106566880	ENSSSAP00000029573	ENSSSAP00000105294	Guanine nucleotide-binding protein subunit beta-5-like.	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like.	0.406
LOC106561786	LOC106571997	ENSSSAP00000029573	ENSSSAP00000074665	Guanine nucleotide-binding protein subunit beta-5-like.	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 isoform X1.	0.479
LOC106561786	LOC106582769	ENSSSAP00000029573	ENSSSAP00000085630	Guanine nucleotide-binding protein subunit beta-5-like.	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like.	0.407
LOC106562494	GNB4	ENSSSAP00000030725	ENSSSAP00000005848	Guanine nucleotide-binding protein subunit beta-5-like isoform X1.	Guanine nucleotide-binding protein subunit beta-4.	0.415
LOC106562494	LOC106565997	ENSSSAP00000030725	ENSSSAP00000035466	Guanine nucleotide-binding protein subunit beta-5-like isoform X1.	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like.	0.416
LOC106562494	LOC106566880	ENSSSAP00000030725	ENSSSAP00000105294	Guanine nucleotide-binding protein subunit beta-5-like isoform X1.	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like.	0.415
LOC106562494	LOC106571997	ENSSSAP00000030725	ENSSSAP00000074665	Guanine nucleotide-binding protein subunit beta-5-like isoform X1.	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 isoform X1.	0.415
LOC106562494	LOC106582769	ENSSSAP00000030725	ENSSSAP00000085630	Guanine nucleotide-binding protein subunit beta-5-like isoform X1.	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like.	0.416
LOC106565997	LOC106561786	ENSSSAP00000035466	ENSSSAP00000029573	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like.	Guanine nucleotide-binding protein subunit beta-5-like.	0.407
LOC106565997	LOC106562494	ENSSSAP00000035466	ENSSSAP00000030725	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like.	Guanine nucleotide-binding protein subunit beta-5-like isoform X1.	0.416
LOC106566880	LOC106561786	ENSSSAP00000105294	ENSSSAP00000029573	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like.	Guanine nucleotide-binding protein subunit beta-5-like.	0.406
LOC106566880	LOC106562494	ENSSSAP00000105294	ENSSSAP00000030725	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like.	Guanine nucleotide-binding protein subunit beta-5-like isoform X1.	0.415
LOC106571997	LOC106561786	ENSSSAP00000074665	ENSSSAP00000029573	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 isoform X1.	Guanine nucleotide-binding protein subunit beta-5-like.	0.479
LOC106571997	LOC106562494	ENSSSAP00000074665	ENSSSAP00000030725	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 isoform X1.	Guanine nucleotide-binding protein subunit beta-5-like isoform X1.	0.415
LOC106582769	LOC106561786	ENSSSAP00000085630	ENSSSAP00000029573	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like.	Guanine nucleotide-binding protein subunit beta-5-like.	0.407
LOC106582769	LOC106562494	ENSSSAP00000085630	ENSSSAP00000030725	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like.	Guanine nucleotide-binding protein subunit beta-5-like isoform X1.	0.416