33 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ccnd2	G1/S-specific cyclin-D2; Belongs to the cyclin family. (296 aa)
	LOC106562137	G2/mitotic-specific cyclin-B1-like isoform X1; Belongs to the cyclin family. (427 aa)
	ccnb1	G2/mitotic-specific cyclin-B1; Belongs to the cyclin family. (401 aa)
	ccnd1	G1/S-specific cyclin-D1; Belongs to the cyclin family. (292 aa)
	LOC106611545	cyclin-A2-like; Belongs to the cyclin family. (431 aa)
	LOC106561356	G1/S-specific cyclin-D2-like; Belongs to the cyclin family. (298 aa)
	LOC106566708	G2/mitotic-specific cyclin-B1-like; Belongs to the cyclin family. (403 aa)
	ccno	cyclin-O; Belongs to the cyclin family. (573 aa)
	LOC106587137	G1/S-specific cyclin-D1; Belongs to the cyclin family. (339 aa)
	ccna1	cyclin-A1 isoform X2; Belongs to the cyclin family. (405 aa)
	LOC106603913	cyclin-J-like; Belongs to the cyclin family. (438 aa)
	LOC106583090	G1/S-specific cyclin-D2-like; Belongs to the cyclin family. (306 aa)
	cntd2	Cyclin N-terminal domain-containing protein 2; Belongs to the cyclin family. (399 aa)
	ccnb2	G2/mitotic-specific cyclin-B2 isoform X1; Belongs to the cyclin family. (390 aa)
	CCND1	G1/S-specific cyclin-D1-like; Belongs to the cyclin family. (291 aa)
	LOC106601568	G1/S-specific cyclin-D2-like; Belongs to the cyclin family. (310 aa)
	LOC106562055	G1/S-specific cyclin-D1-like; Belongs to the cyclin family. (339 aa)
	ccnb3	G2/mitotic-specific cyclin-B3; Belongs to the cyclin family. (414 aa)
	LOC106567423	cyclin-J-like; Belongs to the cyclin family. (418 aa)
	LOC106565646	cyclin-L1-like; Belongs to the cyclin family. (255 aa)
	LOC106601868	cyclin-F-like; Belongs to the cyclin family. (804 aa)
	LOC106604199	cyclin-J-like; Belongs to the cyclin family. (414 aa)
	LOC106606904	G1/S-specific cyclin-D2-like; Belongs to the cyclin family. (307 aa)
	LOC106563680	G2/mitotic-specific cyclin-B3-like; Belongs to the cyclin family. (418 aa)
	ccnk	cyclin-K isoform X1; Belongs to the cyclin family. (565 aa)
	LOC106613252	cyclin-L1-like isoform X1; Belongs to the cyclin family. (539 aa)
	ccnj	cyclin-J; Belongs to the cyclin family. (364 aa)
	LOC106562012	G1/S-specific cyclin-E1-like isoform X1; Belongs to the cyclin family. (410 aa)
	LOC106581444	cyclin-L1-like isoform X2; Belongs to the cyclin family. (603 aa)
	ccne2-2	G1/S-specific cyclin-E2 isoform X1; Belongs to the cyclin family. (420 aa)
	ccne2	G1/S-specific cyclin-E2 isoform X1; Belongs to the cyclin family. (395 aa)
	CCNJL	cyclin-J-like; Belongs to the cyclin family. (427 aa)
	LOC106576262	G1/S-specific cyclin-D2-like; Belongs to the cyclin family. (301 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCND1	LOC106562012	ENSSSAP00000103569	ENSSSAP00000076104	G1/S-specific cyclin-D1-like; Belongs to the cyclin family.	G1/S-specific cyclin-E1-like isoform X1; Belongs to the cyclin family.	0.550
CCND1	ccnd1	ENSSSAP00000103569	ENSSSAP00000012233	G1/S-specific cyclin-D1-like; Belongs to the cyclin family.	G1/S-specific cyclin-D1; Belongs to the cyclin family.	0.900
CCND1	ccne2	ENSSSAP00000103569	ENSSSAP00000063253	G1/S-specific cyclin-D1-like; Belongs to the cyclin family.	G1/S-specific cyclin-E2 isoform X1; Belongs to the cyclin family.	0.629
CCND1	ccne2-2	ENSSSAP00000103569	ENSSSAP00000065573	G1/S-specific cyclin-D1-like; Belongs to the cyclin family.	G1/S-specific cyclin-E2 isoform X1; Belongs to the cyclin family.	0.631
CCNJL	LOC106562012	ENSSSAP00000057327	ENSSSAP00000076104	cyclin-J-like; Belongs to the cyclin family.	G1/S-specific cyclin-E1-like isoform X1; Belongs to the cyclin family.	0.676
CCNJL	LOC106562137	ENSSSAP00000057327	ENSSSAP00000009495	cyclin-J-like; Belongs to the cyclin family.	G2/mitotic-specific cyclin-B1-like isoform X1; Belongs to the cyclin family.	0.581
CCNJL	LOC106563680	ENSSSAP00000057327	ENSSSAP00000040558	cyclin-J-like; Belongs to the cyclin family.	G2/mitotic-specific cyclin-B3-like; Belongs to the cyclin family.	0.581
CCNJL	LOC106566708	ENSSSAP00000057327	ENSSSAP00000056814	cyclin-J-like; Belongs to the cyclin family.	G2/mitotic-specific cyclin-B1-like; Belongs to the cyclin family.	0.581
CCNJL	ccnb1	ENSSSAP00000057327	ENSSSAP00000120894	cyclin-J-like; Belongs to the cyclin family.	G2/mitotic-specific cyclin-B1; Belongs to the cyclin family.	0.581
CCNJL	ccnb2	ENSSSAP00000057327	ENSSSAP00000116988	cyclin-J-like; Belongs to the cyclin family.	G2/mitotic-specific cyclin-B2 isoform X1; Belongs to the cyclin family.	0.581
CCNJL	ccnb3	ENSSSAP00000057327	ENSSSAP00000089816	cyclin-J-like; Belongs to the cyclin family.	G2/mitotic-specific cyclin-B3; Belongs to the cyclin family.	0.581
CCNJL	ccne2	ENSSSAP00000057327	ENSSSAP00000063253	cyclin-J-like; Belongs to the cyclin family.	G1/S-specific cyclin-E2 isoform X1; Belongs to the cyclin family.	0.676
CCNJL	ccne2-2	ENSSSAP00000057327	ENSSSAP00000065573	cyclin-J-like; Belongs to the cyclin family.	G1/S-specific cyclin-E2 isoform X1; Belongs to the cyclin family.	0.676
CCNJL	ccno	ENSSSAP00000057327	ENSSSAP00000054868	cyclin-J-like; Belongs to the cyclin family.	cyclin-O; Belongs to the cyclin family.	0.581
CCNJL	cntd2	ENSSSAP00000057327	ENSSSAP00000026174	cyclin-J-like; Belongs to the cyclin family.	Cyclin N-terminal domain-containing protein 2; Belongs to the cyclin family.	0.581
LOC106561356	LOC106562012	ENSSSAP00000023958	ENSSSAP00000076104	G1/S-specific cyclin-D2-like; Belongs to the cyclin family.	G1/S-specific cyclin-E1-like isoform X1; Belongs to the cyclin family.	0.550
LOC106561356	ccne2	ENSSSAP00000023958	ENSSSAP00000063253	G1/S-specific cyclin-D2-like; Belongs to the cyclin family.	G1/S-specific cyclin-E2 isoform X1; Belongs to the cyclin family.	0.550
LOC106561356	ccne2-2	ENSSSAP00000023958	ENSSSAP00000065573	G1/S-specific cyclin-D2-like; Belongs to the cyclin family.	G1/S-specific cyclin-E2 isoform X1; Belongs to the cyclin family.	0.550
LOC106562012	CCND1	ENSSSAP00000076104	ENSSSAP00000103569	G1/S-specific cyclin-E1-like isoform X1; Belongs to the cyclin family.	G1/S-specific cyclin-D1-like; Belongs to the cyclin family.	0.550
LOC106562012	CCNJL	ENSSSAP00000076104	ENSSSAP00000057327	G1/S-specific cyclin-E1-like isoform X1; Belongs to the cyclin family.	cyclin-J-like; Belongs to the cyclin family.	0.676