107 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	bhmg1	Basic helix-loop-helix and HMG box domain-containing protein 1 isoform X1. (520 aa)
	LOC106578689	Transcription factor Sox-17-alpha-A-like. (393 aa)
	LOC106578720	Transcription factor Sox-17-beta.2-like. (317 aa)
	LOC106567996	Transcription factor 7-like 1-B isoform X1. (625 aa)
	LOC106560691	Transcription factor Sox-19a-like. (311 aa)
	LOC106602948	High mobility group protein B3-like isoform X1. (225 aa)
	LOC106571238	Transcription factor SOX. (369 aa)
	LOC106584342	Transcription factor Sox-2-like. (315 aa)
	LOC106601648	Nucleolar transcription factor 1-like isoform X2. (171 aa)
	LOC106612439	High mobility group-T protein-like isoform X2. (196 aa)
	ubtf	Nucleolar transcription factor 1 isoform X2. (762 aa)
	LOC106571023	Transcription factor Sox-7-like. (437 aa)
	LOC106561060	Transcription factor SOX-6-like isoform X1. (784 aa)
	TFAM	Transcription factor A, mitochondrial-like. (267 aa)
	sox12	Transcription factor SOX. (396 aa)
	LOC106600314	TOX high mobility group box family member 4-A-like isoform X1. (704 aa)
	LOC106579008	Transcription factor Sox-9-B-like isoform X2. (492 aa)
	LOC106567524	Lymphoid enhancer-binding factor 1-like isoform X1. (511 aa)
	LOC106608930	High mobility group protein B3-like. (208 aa)
	hmg20a	High mobility group protein 20A isoform X1. (323 aa)
	sox8	Transcription factor SOX-8 isoform X2. (470 aa)
	LOC106572669	Histone-lysine N-methyltransferase 2D-like isoform X3. (5331 aa)
	LOC106608953	Transcription factor Sox-19b-like. (291 aa)
	sox6	Transcription factor SOX-6. (817 aa)
	LOC106582442	Transcription factor Sox-21-B-like. (241 aa)
	LOC100380856	TOX high mobility group box family member 2 isoform X2. (410 aa)
	LOC106586270	Transcription factor Sox-21-B. (243 aa)
	LOC106582022	Transcription factor Sox-1a isoform X1. (309 aa)
	LOC106565275	TOX high mobility group box family member 2-like isoform X2. (552 aa)
	LOC106565587	LOW QUALITY PROTEIN: protein polybromo-1-like. (1663 aa)
	LOC106589342	Transcription factor Sox-9-A-like. (491 aa)
	LOC106589333	Transcription factor Sox-8-like. (465 aa)
	LOC106589326	Transcription factor 7-like 2 isoform X3. (644 aa)
	LOC106565336	Protein polybromo-1-like isoform X1. (1682 aa)
	LOC106583120	LOW QUALITY PROTEIN: transcription factor Sox-13-like. (633 aa)
	LOC106563056	Transcription factor 7-like 1-B isoform X1. (622 aa)
	LOC106602577	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (670 aa)
	LOC106583657	TOX high mobility group box family member 2-like isoform X1. (551 aa)
	LOC106570138	Protein capicua homolog. (2564 aa)
	LOC106568871	Thymocyte selection-associated high mobility group box protein TOX-like isoform X1. (566 aa)
	wdhd1	WD repeat and HMG-box DNA-binding protein 1 isoform X1. (1169 aa)
	LOC106580381	Transcription factor 7-like 1-B isoform X1. (579 aa)
	LOC100286423	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (709 aa)
	LOC106569297	Transcription factor SOX. (385 aa)
	HBP1-3	HMG box-containing protein 1-like. (471 aa)
	LOC106603655	HMG box transcription factor BBX-like isoform X4. (765 aa)
	LOC106567484	Transcription factor SOX-30-like. (635 aa)
	LOC106583529	Protein polybromo-1-like isoform X1. (1706 aa)
	LOC106591826	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (409 aa)
	HMG20B	annotation not available (296 aa)
	LOC106574593	Transcription factor Sox-1a-like. (339 aa)
	LOC106567634	HMG box transcription factor BBX-like isoform X1. (928 aa)
	SOX4	Transcription factor SOX. (365 aa)
	LOC106606426	Transcription factor Sox-9-A-like isoform X1. (490 aa)
	LOC100136470	Sox8. (458 aa)
	LOC106609328	Transcription factor SOX-5-like isoform X3. (793 aa)
	LOC106579092	Nucleolar transcription factor 1-like isoform X2. (158 aa)
	sox11	Transcription factor SOX. (367 aa)
	LOC106608972	TOX high mobility group box family member 4-B-like isoform X1. (683 aa)
	LOC106579026	Transcription factor 7-like 2 isoform X2. (640 aa)
	LOC106588265	Protein capicua homolog. (2567 aa)
	LOC106568666	Nucleolar transcription factor 1-A-like isoform X2. (719 aa)
	LOC106601158	Transcription factor Sox-10-like. (496 aa)
	hmgb1	High mobility group protein B1 isoform X1. (203 aa)
	LOC106613768	annotation not available (304 aa)
	LOC106608403	High mobility group protein B2-like. (212 aa)
	hmgxb3	HMG domain-containing protein 3 isoform X3. (1318 aa)
	sox10	Transcription factor SOX-10. (495 aa)
	LOC106607053	HMG box-containing protein 4-like. (620 aa)
	LOC106603814	Transcription factor 7-like 2 isoform X3. (472 aa)
	LOC106569449	TOX high mobility group box family member 4-A-like isoform X2. (713 aa)
	hmgb1-2	High mobility group-T protein. (345 aa)
	SOX10	Transcription factor Sox-10-like. (492 aa)
	LOC106610697	Transcription factor SOX. (335 aa)
	LOC106590076	Transcription factor Sox-17-alpha-A-like. (321 aa)
	LOC106590153	Transcription factor Sox-17-alpha-A-like. (390 aa)
	SMARCE1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like. (431 aa)
	LOC106565622	Transcription factor SOX-13-like isoform X3. (663 aa)
	HBP1-2	HMG box-containing protein 1-like isoform X1. (493 aa)
	LOC106566354	Transcription factor Sox-18-like. (513 aa)
	LOC106599578	Thymocyte selection-associated high mobility group box protein TOX-like isoform X1. (616 aa)
	SSRP1	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (705 aa)
	LOC106602895	Transcription factor Sox-19a-like. (322 aa)
	LOC106602389	High mobility group protein B2-like isoform X1. (238 aa)
	LOC106586732	Transcription factor Sox-1a-like isoform X1. (309 aa)
	sox14	Transcription factor SOX-14. (235 aa)
	LOC106608338	Transcription factor Sox-7-like. (455 aa)
	ubf1	Nucleolar transcription factor 1 isoform X4. (693 aa)
	LOC106607141	Transcription factor Sox-10-like. (496 aa)
	kmt2d	Histone-lysine N-methyltransferase 2D isoform X1. (5195 aa)
	hmgb2	High mobility group protein B2. (273 aa)
	LOC106598900	Transcription factor Sox-14-like. (236 aa)
	tox3	TOX high mobility group box family member 3. (609 aa)
	LOC106580642	High mobility group-T protein-like isoform X1. (205 aa)
	hmgb3	High mobility group protein B3. (206 aa)
	HBP1	HMG box-containing protein 1-like isoform X1. (479 aa)
	LOC106607186	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like. (432 aa)
	pms1	PMS1 protein homolog 1 isoform X2. (914 aa)
	lef1	Lymphoid enhancer-binding factor 1 isoform X5. (408 aa)
	SMARCE1-3	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like. (429 aa)
	LOC106572917	Transcription factor Sox-18A-like. (596 aa)
	hbp1	LOW QUALITY PROTEIN: HMG box-containing protein 1. (458 aa)
	LOC106563671	High mobility group protein B3-like. (201 aa)
	LOC106576150	Transcription factor SOX-5-like isoform X3. (780 aa)
	LOC106562393	TOX high mobility group box family member 3-like. (485 aa)
	LOC106565395	Transcription factor SOX. (397 aa)
	LOC106577904	Transcription factor Sox-19b-like. (303 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HMG20B	LOC100286423	ENSSSAP00000024201	ENSSSAP00000100181	annotation not available	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.432
HMG20B	LOC106591826	ENSSSAP00000024201	ENSSSAP00000020989	annotation not available	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.432
HMG20B	LOC106602577	ENSSSAP00000024201	ENSSSAP00000102827	annotation not available	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.432
HMG20B	SSRP1	ENSSSAP00000024201	ENSSSAP00000059121	annotation not available	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.432
HMG20B	hmg20a	ENSSSAP00000024201	ENSSSAP00000077850	annotation not available	High mobility group protein 20A isoform X1.	0.935
LOC100136470	LOC106567524	ENSSSAP00000029965	ENSSSAP00000076489	Sox8.	Lymphoid enhancer-binding factor 1-like isoform X1.	0.542
LOC100136470	LOC106574593	ENSSSAP00000029965	ENSSSAP00000026355	Sox8.	Transcription factor Sox-1a-like.	0.463
LOC100136470	LOC106608338	ENSSSAP00000029965	ENSSSAP00000055177	Sox8.	Transcription factor Sox-7-like.	0.412
LOC100136470	LOC106608953	ENSSSAP00000029965	ENSSSAP00000082937	Sox8.	Transcription factor Sox-19b-like.	0.416
LOC100136470	LOC106609328	ENSSSAP00000029965	ENSSSAP00000094355	Sox8.	Transcription factor SOX-5-like isoform X3.	0.411
LOC100136470	lef1	ENSSSAP00000029965	ENSSSAP00000048989	Sox8.	Lymphoid enhancer-binding factor 1 isoform X5.	0.431
LOC100136470	sox14	ENSSSAP00000029965	ENSSSAP00000055609	Sox8.	Transcription factor SOX-14.	0.416
LOC100136470	sox6	ENSSSAP00000029965	ENSSSAP00000083737	Sox8.	Transcription factor SOX-6.	0.475
LOC100286423	HMG20B	ENSSSAP00000100181	ENSSSAP00000024201	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	annotation not available	0.432
LOC100286423	LOC100380856	ENSSSAP00000100181	ENSSSAP00000084347	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	TOX high mobility group box family member 2 isoform X2.	0.432
LOC100286423	LOC106562393	ENSSSAP00000100181	ENSSSAP00000040612	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	TOX high mobility group box family member 3-like.	0.432
LOC100286423	LOC106563671	ENSSSAP00000100181	ENSSSAP00000043187	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	High mobility group protein B3-like.	0.432
LOC100286423	LOC106565275	ENSSSAP00000100181	ENSSSAP00000117887	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	TOX high mobility group box family member 2-like isoform X2.	0.432
LOC100286423	LOC106568666	ENSSSAP00000100181	ENSSSAP00000090518	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	Nucleolar transcription factor 1-A-like isoform X2.	0.449
LOC100286423	LOC106568871	ENSSSAP00000100181	ENSSSAP00000101282	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	Thymocyte selection-associated high mobility group box protein TOX-like isoform X1.	0.432