6 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106594655	ERI1 exoribonuclease 2-like. (883 aa)
	zcchc4	Zinc finger CCHC domain-containing protein 4 isoform X1. (495 aa)
	apex2	DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. (601 aa)
	ttf2	Transcription termination factor 2 isoform X1. (1193 aa)
	LOC106567314	DNA-(Apurinic or apyrimidinic site) lyase 2-like. (299 aa)
	neil3	Endonuclease 8-like 3. (589 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106567314	neil3	ENSSSAP00000091945	ENSSSAP00000100640	DNA-(Apurinic or apyrimidinic site) lyase 2-like.	Endonuclease 8-like 3.	0.432
apex2	neil3	ENSSSAP00000077558	ENSSSAP00000100640	DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends.	Endonuclease 8-like 3.	0.432
neil3	LOC106567314	ENSSSAP00000100640	ENSSSAP00000091945	Endonuclease 8-like 3.	DNA-(Apurinic or apyrimidinic site) lyase 2-like.	0.432
neil3	apex2	ENSSSAP00000100640	ENSSSAP00000077558	Endonuclease 8-like 3.	DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends.	0.432