STRINGSTRING
dis3 dis3 lig1 lig1 LOC106569128 LOC106569128 LOC106589535 LOC106589535 RM02 RM02 polr2h polr2h LOC106603066 LOC106603066 csdc2 csdc2 LOC106601238 LOC106601238 psmc1 psmc1 if2a if2a PDCD11 PDCD11 LOC106565269 LOC106565269 dis3l2 dis3l2 YBX2 YBX2 csde1 csde1 NABP2 NABP2 LOC106578225 LOC106578225 exosc3 exosc3 LOC106608224 LOC106608224 LOC106608315 LOC106608315 prs6a prs6a mcm2 mcm2 LOC106571378 LOC106571378 ten1 ten1 LOC106569286 LOC106569286 mc6zb mc6zb ttc14 ttc14 MCM5 MCM5 CSDE1 CSDE1 cp075-2 cp075-2 lig4 lig4 PNPT1 PNPT1 LOC106601127 LOC106601127 LOC106572196 LOC106572196 LOC106575791 LOC106575791 LOC106595384 LOC106595384 LOC106563509 LOC106563509 srbd1 srbd1 LOC106577556-2 LOC106577556-2 meiob meiob mcm7 mcm7 LOC106601249 LOC106601249 mcm8 mcm8 psmc2 psmc2 LOC106608168 LOC106608168 LOC106566095 LOC106566095 LOC106572208 LOC106572208 LOC106607557 LOC106607557 LOC106572236 LOC106572236 exosc1 exosc1 brca2 brca2 eif1ad eif1ad rfa1 rfa1 aimp1 aimp1 LOC106569474 LOC106569474 LOC106613876 LOC106613876 LIN28B LIN28B LOC106583270 LOC106583270 rpa2 rpa2 LOC106583347 LOC106583347 exos2 exos2 LOC106581684 LOC106581684 LOC106605234 LOC106605234 mcm10 mcm10 LOC106602907 LOC106602907 lig3 lig3 LOC106588659 LOC106588659 LOC106588661 LOC106588661 mcm3 mcm3 LOC106607343 LOC106607343 LOC106564697 LOC106564697 LOC106570275 LOC106570275 LOC106581840 LOC106581840 LIN28B-2 LIN28B-2 LOC106612273 LOC106612273 LOC106605925 LOC106605925 mrps17 mrps17 LOC106591161 LOC106591161 LOC106594708 LOC106594708 LOC106571153 LOC106571153 sydc sydc spout1 spout1 radx radx LOC106576728 LOC106576728 YBX1 YBX1 nars2 nars2 yars1 yars1 EIF2S1 EIF2S1 LOC106571672 LOC106571672 CSDC2 CSDC2 prs6b prs6b LOC106613116 LOC106613116 fam35a fam35a LOC106605109 LOC106605109 LOC106605111 LOC106605111 LOC101448018 LOC101448018 LOC106577249 LOC106577249 LOC106579096 LOC106579096 NARS1-3 NARS1-3 mcm4 mcm4 LOC100380865 LOC100380865 LOC106568958 LOC106568958 pot1 pot1 SUPT6H-2 SUPT6H-2 LOC106576077 LOC106576077 LOC106570310 LOC106570310 helz2 helz2 LOC106583651 LOC106583651 PNPT1-2 PNPT1-2 prs10 prs10 LOC106589300 LOC106589300 LOC106587184 LOC106587184 LOC106590461 LOC106590461 LOC106586766 LOC106586766 LOC106603189 LOC106603189 LOC106586796 LOC106586796 LOC106583719 LOC106583719 LOC106588633 LOC106588633 LOC106581950 LOC106581950 rngtt rngtt dars2 dars2 LOC106561966 LOC106561966 LOC106590523 LOC106590523 zcchc17 zcchc17 ybx2a ybx2a LOC106560381 LOC106560381
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
dis3Exosome complex exonuclease RRP44 isoform X1; Belongs to the RNR ribonuclease family. (949 aa)
lig1DNA ligase. (1088 aa)
LOC106569128DNA helicase; Belongs to the MCM family. (892 aa)
LOC106589535Cold shock domain-containing protein C2-like. (158 aa)
RM0239S ribosomal protein L2, mitochondrial-like. (170 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
LOC106603066Eukaryotic translation initiation factor 1A, X-chromosomal-like; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits. (144 aa)
csdc2Cold shock domain-containing protein C2 isoform X1. (159 aa)
LOC106601238DNA-directed RNA polymerase III subunit RPC8-like isoform X1. (208 aa)
psmc126S protease regulatory subunit 4; Belongs to the AAA ATPase family. (497 aa)
if2aEukaryotic translation initiation factor 2 subunit 1. (315 aa)
PDCD11Protein RRP5 homolog. (1809 aa)
LOC106565269Helicase with zinc finger domain 2-like. (2846 aa)
dis3l2DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily. (1049 aa)
YBX2Y-box-binding protein 2-A-like isoform X2. (331 aa)
csde1Cold shock domain-containing protein E1 isoform X3. (913 aa)
NABP2SOSS complex subunit B1-B-like isoform X1. (199 aa)
LOC106578225Aminoacyl tRNA synthase complex-interacting multifunctional protein 1-like. (327 aa)
exosc3Exosome complex component RRP40. (244 aa)
LOC10660822426S protease regulatory subunit 4-like; Belongs to the AAA ATPase family. (440 aa)
LOC106608315Zygotic DNA replication licensing factor mcm3-like. (385 aa)
prs6a26S protease regulatory subunit 6A; Belongs to the AAA ATPase family. (490 aa)
mcm2DNA helicase; Belongs to the MCM family. (886 aa)
LOC106571378DNA helicase MCM9-like; Belongs to the MCM family. (1213 aa)
ten1CST complex subunit TEN1 isoform X2. (102 aa)
LOC106569286DNA helicase; Belongs to the MCM family. (826 aa)
mc6zbDNA helicase; Belongs to the MCM family. (838 aa)
ttc14Tetratricopeptide repeat protein 14 isoform X1. (799 aa)
MCM5DNA helicase; Belongs to the MCM family. (770 aa)
CSDE1Cold shock domain-containing protein E1-like isoform X7. (916 aa)
cp075-2OB DNA-binding domain-containing protein C16orf175 isoform X1. (147 aa)
lig4DNA ligase. (927 aa)
PNPT1Polyribonucleotide nucleotidyltransferase 1, mitochondrial-like. (779 aa)
LOC10660112740S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (161 aa)
LOC106572196asparagine--tRNA ligase, cytoplasmic-like. (560 aa)
LOC106575791SOSS complex subunit B2-like. (203 aa)
LOC106595384Calcium-regulated heat stable protein 1-like. (150 aa)
LOC10656350928S ribosomal protein S12, mitochondrial-like isoform X1; Belongs to the universal ribosomal protein uS12 family. (144 aa)
srbd1S1 RNA-binding domain-containing protein 1 isoform X1. (1020 aa)
LOC106577556-2Eukaryotic translation initiation factor 5A. (241 aa)
meiobMeiosis-specific with OB domain-containing protein isoform X1. (464 aa)
mcm7DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (727 aa)
LOC10660124926S protease regulatory subunit 4; Belongs to the AAA ATPase family. (461 aa)
mcm8DNA helicase MCM8; Belongs to the MCM family. (862 aa)
psmc226S protease regulatory subunit 7; Belongs to the AAA ATPase family. (434 aa)
LOC10660816826S protease regulatory subunit 10B-like; Belongs to the AAA ATPase family. (403 aa)
LOC10656609540S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (153 aa)
LOC106572208Nuclease-sensitive element-binding protein 1-like isoform X1. (379 aa)
LOC106607557Protein lin-28 homolog A-like isoform X1. (271 aa)
LOC106572236asparagine--tRNA ligase, cytoplasmic-like. (563 aa)
exosc1Exosome complex component CSL4 isoform X1. (195 aa)
brca2Breast cancer type 2 susceptibility protein isoform X5. (2826 aa)
eif1adProbable RNA-binding protein EIF1AD. (183 aa)
rfa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (607 aa)
aimp1Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 isoform X1. (355 aa)
LOC106569474DNA helicase; Belongs to the MCM family. (837 aa)
LOC106613876Tetratricopeptide repeat protein 14-like. (751 aa)
LIN28BProtein lin-28 homolog A-like isoform X1. (285 aa)
LOC106583270Protein lin-28 homolog A-like isoform X1. (202 aa)
rpa2Replication protein A 32 kDa subunit. (278 aa)
LOC106583347SOSS complex subunit B1-like. (193 aa)
exos2Exosome complex exonuclease RRP4. (296 aa)
LOC106581684SOSS complex subunit B2-like. (217 aa)
LOC10660523426S protease regulatory subunit 6B; Belongs to the AAA ATPase family. (418 aa)
mcm10Protein MCM10 homolog isoform X1. (934 aa)
LOC106602907Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1768 aa)
lig3DNA ligase. (1023 aa)
LOC106588659Replication protein A 32 kDa subunit-A-like isoform X1. (266 aa)
LOC106588661Protein lin-28 homolog A-like isoform X3. (200 aa)
mcm3DNA helicase; Belongs to the MCM family. (813 aa)
LOC106607343recQ-mediated genome instability protein 2-like. (147 aa)
LOC106564697CST complex subunit STN1; Component of the CST complex proposed to act as a specialized replication factor promoting DNA replication under conditions of replication stress or natural replication barriers such as the telomere duplex. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves. Initially the CST complex has been proposed to protect telomeres from DNA degradation. However, the CST complex has been shown to be involved in several aspects of telomere replication. (375 aa)
LOC106570275Protein lin-28 homolog A-like isoform X2. (202 aa)
LOC106581840aspartate--tRNA ligase, cytoplasmic-like. (542 aa)
LIN28B-2Protein lin-28 homolog A-like isoform X1. (300 aa)
LOC106612273DNA-directed RNA polymerase II subunit RPB7. (172 aa)
LOC106605925Uncharacterized protein LOC106605925. (1820 aa)
mrps1728S ribosomal protein S17, mitochondrial isoform X1. (150 aa)
LOC106591161LOW QUALITY PROTEIN: DIS3-like exonuclease 1. (626 aa)
LOC106594708Transcription elongation factor SPT6-like. (415 aa)
LOC106571153Protein lin-28 homolog B-like isoform X3. (231 aa)
sydcAspartyl-tRNA synthetase, cytoplasmic. (531 aa)
spout1CI114 protein. (398 aa)
radxUncharacterized protein CXorf57 homolog isoform X1. (870 aa)
LOC106576728Uncharacterized protein LOC106576728 isoform X1. (1758 aa)
YBX1Y-box binding protein-2 isoform X2. (322 aa)
nars2Probable asparagine--tRNA ligase, mitochondrial. (287 aa)
yars1Tyrosine--tRNA ligase. (528 aa)
EIF2S1Eukaryotic translation initiation factor 2 subunit 1-like. (315 aa)
LOC106571672Eukaryotic translation initiation factor 2 subunit 1. (315 aa)
CSDC2Cold shock domain-containing protein C2-like. (159 aa)
prs6b26S protease regulatory subunit 6B; Belongs to the AAA ATPase family. (434 aa)
LOC106613116Cell division cycle and apoptosis regulator protein 1-like isoform X4. (1148 aa)
fam35aProtein FAM35A isoform X1. (564 aa)
LOC106605109Replication protein A 32 kDa subunit-like. (278 aa)
LOC106605111Protein lin-28 homolog A-like isoform X1. (202 aa)
LOC101448018Eukaryotic translation initiation factor 5A. (157 aa)
LOC106577249Cell division cycle and apoptosis regulator protein 1-like isoform X6. (1188 aa)
LOC10657909626S protease regulatory subunit 8; Belongs to the AAA ATPase family. (442 aa)
NARS1-3asparagine--tRNA ligase, cytoplasmic-like isoform X1. (587 aa)
mcm4DNA helicase; Belongs to the MCM family. (881 aa)
LOC100380865Lysine--tRNA ligase. (644 aa)
LOC10656895840S ribosomal protein S28. (69 aa)
pot1Protection of telomeres protein 1 isoform X1. (838 aa)
SUPT6H-2Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1739 aa)
LOC106576077Single-stranded DNA-binding protein, mitochondrial-like isoform X1. (221 aa)
LOC106570310Replication protein A 14 kDa subunit-like. (147 aa)
helz2Helicase with zinc finger domain 2 isoform X1. (2725 aa)
LOC106583651Helicase with zinc finger domain 2-like. (2816 aa)
PNPT1-2Polyribonucleotide nucleotidyltransferase 1, mitochondrial isoform X1. (777 aa)
prs1026S protease regulatory subunit S10B; Belongs to the AAA ATPase family. (400 aa)
LOC106589300ATP-dependent RNA helicase DHX8. (1210 aa)
LOC106587184Lysine--tRNA ligase. (603 aa)
LOC106590461Eukaryotic translation initiation factor 1A, X-chromosomal-like isoform X2; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits. (266 aa)
LOC106586766CST complex subunit STN1; Component of the CST complex proposed to act as a specialized replication factor promoting DNA replication under conditions of replication stress or natural replication barriers such as the telomere duplex. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves. Initially the CST complex has been proposed to protect telomeres from DNA degradation. However, the CST complex has been shown to be involved in several aspects of telomere replication. (439 aa)
LOC10660318928S ribosomal protein S12, mitochondrial-like; Belongs to the universal ribosomal protein uS12 family. (144 aa)
LOC10658679660S ribosomal protein L8-like. (282 aa)
LOC106583719DNA helicase; Belongs to the MCM family. (921 aa)
LOC106588633Protein RRP5 homolog. (1809 aa)
LOC10658195060S ribosomal protein L8. (316 aa)
rngttPolynucleotide 5'-triphosphatase; Bifunctional mRNA-capping enzyme exhibiting RNA 5'- triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5'-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the gmp moiety of GTP to the 5'-diphosphate terminus. (603 aa)
dars2aspartate--tRNA ligase, mitochondrial. (665 aa)
LOC10656196626S protease regulatory subunit 6A-B-like isoform X1; Belongs to the AAA ATPase family. (445 aa)
LOC106590523Eukaryotic translation initiation factor 5A. (169 aa)
zcchc17Nucleolar protein of 40 kDa. (261 aa)
ybx2aY-box-binding protein 2-A isoform X1. (339 aa)
LOC106560381DNA helicase; Belongs to the MCM family. (808 aa)
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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