7 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106608924	Histone acetyltransferase p300-like isoform X2. (2752 aa)
	xpp3	Histone acetyltransferase p300-like isoform X8. (2344 aa)
	LOC106564464	CREB-binding protein-like isoform X6. (2486 aa)
	LOC106589530	CREB-binding protein-like isoform X4. (2921 aa)
	LOC106590442	CREB-binding protein-like isoform X1. (2411 aa)
	LOC106606488	LOW QUALITY PROTEIN: CREB-binding protein-like. (2296 aa)
	LOC106607167	Histone acetyltransferase p300-like isoform X9. (2695 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106564464	LOC106589530	ENSSSAP00000014055	ENSSSAP00000020738	CREB-binding protein-like isoform X6.	CREB-binding protein-like isoform X4.	0.953
LOC106564464	LOC106607167	ENSSSAP00000014055	ENSSSAP00000081005	CREB-binding protein-like isoform X6.	Histone acetyltransferase p300-like isoform X9.	0.953
LOC106564464	LOC106608924	ENSSSAP00000014055	ENSSSAP00000003652	CREB-binding protein-like isoform X6.	Histone acetyltransferase p300-like isoform X2.	0.953
LOC106564464	xpp3	ENSSSAP00000014055	ENSSSAP00000005298	CREB-binding protein-like isoform X6.	Histone acetyltransferase p300-like isoform X8.	0.954
LOC106589530	LOC106564464	ENSSSAP00000020738	ENSSSAP00000014055	CREB-binding protein-like isoform X4.	CREB-binding protein-like isoform X6.	0.953
LOC106589530	LOC106590442	ENSSSAP00000020738	ENSSSAP00000043542	CREB-binding protein-like isoform X4.	CREB-binding protein-like isoform X1.	0.995
LOC106589530	LOC106606488	ENSSSAP00000020738	ENSSSAP00000047340	CREB-binding protein-like isoform X4.	LOW QUALITY PROTEIN: CREB-binding protein-like.	0.953
LOC106589530	LOC106607167	ENSSSAP00000020738	ENSSSAP00000081005	CREB-binding protein-like isoform X4.	Histone acetyltransferase p300-like isoform X9.	0.901
LOC106589530	xpp3	ENSSSAP00000020738	ENSSSAP00000005298	CREB-binding protein-like isoform X4.	Histone acetyltransferase p300-like isoform X8.	0.901
LOC106590442	LOC106589530	ENSSSAP00000043542	ENSSSAP00000020738	CREB-binding protein-like isoform X1.	CREB-binding protein-like isoform X4.	0.995
LOC106590442	LOC106607167	ENSSSAP00000043542	ENSSSAP00000081005	CREB-binding protein-like isoform X1.	Histone acetyltransferase p300-like isoform X9.	0.995
LOC106590442	LOC106608924	ENSSSAP00000043542	ENSSSAP00000003652	CREB-binding protein-like isoform X1.	Histone acetyltransferase p300-like isoform X2.	0.953
LOC106590442	xpp3	ENSSSAP00000043542	ENSSSAP00000005298	CREB-binding protein-like isoform X1.	Histone acetyltransferase p300-like isoform X8.	0.995
LOC106606488	LOC106589530	ENSSSAP00000047340	ENSSSAP00000020738	LOW QUALITY PROTEIN: CREB-binding protein-like.	CREB-binding protein-like isoform X4.	0.953
LOC106606488	LOC106607167	ENSSSAP00000047340	ENSSSAP00000081005	LOW QUALITY PROTEIN: CREB-binding protein-like.	Histone acetyltransferase p300-like isoform X9.	0.953
LOC106606488	LOC106608924	ENSSSAP00000047340	ENSSSAP00000003652	LOW QUALITY PROTEIN: CREB-binding protein-like.	Histone acetyltransferase p300-like isoform X2.	0.953
LOC106606488	xpp3	ENSSSAP00000047340	ENSSSAP00000005298	LOW QUALITY PROTEIN: CREB-binding protein-like.	Histone acetyltransferase p300-like isoform X8.	0.954
LOC106607167	LOC106564464	ENSSSAP00000081005	ENSSSAP00000014055	Histone acetyltransferase p300-like isoform X9.	CREB-binding protein-like isoform X6.	0.953
LOC106607167	LOC106589530	ENSSSAP00000081005	ENSSSAP00000020738	Histone acetyltransferase p300-like isoform X9.	CREB-binding protein-like isoform X4.	0.901
LOC106607167	LOC106590442	ENSSSAP00000081005	ENSSSAP00000043542	Histone acetyltransferase p300-like isoform X9.	CREB-binding protein-like isoform X1.	0.995