9 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MARF1	Meiosis arrest female protein 1 homolog. (1588 aa)
	LOC106589087	Meiosis arrest female protein 1 homolog isoform X1. (1251 aa)
	TDRD5	Tudor domain-containing protein 5-like. (981 aa)
	LOC106577912	Tudor domain-containing protein 7B-like isoform X1. (1182 aa)
	LOC106594953	Meiosis arrest female protein 1 homolog isoform X3. (1153 aa)
	LOC106602533	Tudor domain-containing protein 7B-like. (1257 aa)
	LOC100380663	Meiosis arrest female protein 1 homolog isoform X6. (2424 aa)
	LOC106608959	Tudor domain-containing protein 7B-like isoform X1. (1177 aa)
	LOC106589505	Uncharacterized protein LOC106589505 isoform X1. (3186 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106577912	TDRD5	ENSSSAP00000046567	ENSSSAP00000037420	Tudor domain-containing protein 7B-like isoform X1.	Tudor domain-containing protein 5-like.	0.439
LOC106589087	TDRD5	ENSSSAP00000014268	ENSSSAP00000037420	Meiosis arrest female protein 1 homolog isoform X1.	Tudor domain-containing protein 5-like.	0.510
LOC106594953	TDRD5	ENSSSAP00000067959	ENSSSAP00000037420	Meiosis arrest female protein 1 homolog isoform X3.	Tudor domain-containing protein 5-like.	0.510
LOC106602533	TDRD5	ENSSSAP00000097867	ENSSSAP00000037420	Tudor domain-containing protein 7B-like.	Tudor domain-containing protein 5-like.	0.439
LOC106608959	TDRD5	ENSSSAP00000088285	ENSSSAP00000037420	Tudor domain-containing protein 7B-like isoform X1.	Tudor domain-containing protein 5-like.	0.439
MARF1	TDRD5	ENSSSAP00000005460	ENSSSAP00000037420	Meiosis arrest female protein 1 homolog.	Tudor domain-containing protein 5-like.	0.510
TDRD5	LOC106577912	ENSSSAP00000037420	ENSSSAP00000046567	Tudor domain-containing protein 5-like.	Tudor domain-containing protein 7B-like isoform X1.	0.439
TDRD5	LOC106589087	ENSSSAP00000037420	ENSSSAP00000014268	Tudor domain-containing protein 5-like.	Meiosis arrest female protein 1 homolog isoform X1.	0.510
TDRD5	LOC106594953	ENSSSAP00000037420	ENSSSAP00000067959	Tudor domain-containing protein 5-like.	Meiosis arrest female protein 1 homolog isoform X3.	0.510
TDRD5	LOC106602533	ENSSSAP00000037420	ENSSSAP00000097867	Tudor domain-containing protein 5-like.	Tudor domain-containing protein 7B-like.	0.439
TDRD5	LOC106608959	ENSSSAP00000037420	ENSSSAP00000088285	Tudor domain-containing protein 5-like.	Tudor domain-containing protein 7B-like isoform X1.	0.439
TDRD5	MARF1	ENSSSAP00000037420	ENSSSAP00000005460	Tudor domain-containing protein 5-like.	Meiosis arrest female protein 1 homolog.	0.510