20 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106613083	A-kinase anchor protein 1, mitochondrial-like isoform X1. (906 aa)
	LOC106598466	Putative ATP-dependent RNA helicase TDRD9. (1342 aa)
	LOC106577912	Tudor domain-containing protein 7B-like isoform X1. (1182 aa)
	tdrd12	Putative ATP-dependent RNA helicase TDRD12. (1536 aa)
	tdrkh	Tudor and KH domain-containing protein isoform X2. (950 aa)
	LOC106609593	Staphylococcal nuclease domain-containing protein 1-like. (178 aa)
	snd1	Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs. (712 aa)
	LOC106607789	Tudor domain-containing protein 15-like. (1876 aa)
	LOC106610980	Putative ATP-dependent RNA helicase TDRD9 isoform X3. (1339 aa)
	TDRD5	Tudor domain-containing protein 5-like. (981 aa)
	LOC106581263	A-kinase anchor protein 1, mitochondrial-like. (902 aa)
	tdrd6	Tudor domain-containing protein 6. (2304 aa)
	LOC106567763	A-kinase anchor protein 1, mitochondrial-like. (816 aa)
	LOC106603290	A-kinase anchor protein 1, mitochondrial-like. (849 aa)
	rnf17	RING finger protein 17 isoform X3. (1664 aa)
	tdrd1	Tudor domain-containing protein 1 isoform X2. (1191 aa)
	cssa09h3orf33	Protein C3orf33 homolog isoform X1. (426 aa)
	LOC106608959	Tudor domain-containing protein 7B-like isoform X1. (1177 aa)
	tdrd15	Tudor domain-containing protein 15 isoform X2. (1881 aa)
	LOC106602533	Tudor domain-containing protein 7B-like. (1257 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106567763	LOC106577912	ENSSSAP00000101374	ENSSSAP00000046567	A-kinase anchor protein 1, mitochondrial-like.	Tudor domain-containing protein 7B-like isoform X1.	0.429
LOC106567763	LOC106602533	ENSSSAP00000101374	ENSSSAP00000097867	A-kinase anchor protein 1, mitochondrial-like.	Tudor domain-containing protein 7B-like.	0.429
LOC106567763	LOC106607789	ENSSSAP00000101374	ENSSSAP00000032579	A-kinase anchor protein 1, mitochondrial-like.	Tudor domain-containing protein 15-like.	0.429
LOC106567763	LOC106608959	ENSSSAP00000101374	ENSSSAP00000088285	A-kinase anchor protein 1, mitochondrial-like.	Tudor domain-containing protein 7B-like isoform X1.	0.429
LOC106567763	LOC106609593	ENSSSAP00000101374	ENSSSAP00000004444	A-kinase anchor protein 1, mitochondrial-like.	Staphylococcal nuclease domain-containing protein 1-like.	0.429
LOC106567763	TDRD5	ENSSSAP00000101374	ENSSSAP00000037420	A-kinase anchor protein 1, mitochondrial-like.	Tudor domain-containing protein 5-like.	0.536
LOC106567763	rnf17	ENSSSAP00000101374	ENSSSAP00000080392	A-kinase anchor protein 1, mitochondrial-like.	RING finger protein 17 isoform X3.	0.429
LOC106567763	snd1	ENSSSAP00000101374	ENSSSAP00000027325	A-kinase anchor protein 1, mitochondrial-like.	Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs.	0.429
LOC106567763	tdrd1	ENSSSAP00000101374	ENSSSAP00000085561	A-kinase anchor protein 1, mitochondrial-like.	Tudor domain-containing protein 1 isoform X2.	0.441
LOC106567763	tdrd15	ENSSSAP00000101374	ENSSSAP00000098161	A-kinase anchor protein 1, mitochondrial-like.	Tudor domain-containing protein 15 isoform X2.	0.429
LOC106567763	tdrd6	ENSSSAP00000101374	ENSSSAP00000105881	A-kinase anchor protein 1, mitochondrial-like.	Tudor domain-containing protein 6.	0.429
LOC106577912	LOC106567763	ENSSSAP00000046567	ENSSSAP00000101374	Tudor domain-containing protein 7B-like isoform X1.	A-kinase anchor protein 1, mitochondrial-like.	0.429
LOC106577912	LOC106581263	ENSSSAP00000046567	ENSSSAP00000062638	Tudor domain-containing protein 7B-like isoform X1.	A-kinase anchor protein 1, mitochondrial-like.	0.429
LOC106577912	LOC106598466	ENSSSAP00000046567	ENSSSAP00000041487	Tudor domain-containing protein 7B-like isoform X1.	Putative ATP-dependent RNA helicase TDRD9.	0.606
LOC106577912	LOC106603290	ENSSSAP00000046567	ENSSSAP00000063425	Tudor domain-containing protein 7B-like isoform X1.	A-kinase anchor protein 1, mitochondrial-like.	0.429
LOC106577912	LOC106610980	ENSSSAP00000046567	ENSSSAP00000033653	Tudor domain-containing protein 7B-like isoform X1.	Putative ATP-dependent RNA helicase TDRD9 isoform X3.	0.606
LOC106577912	LOC106613083	ENSSSAP00000046567	ENSSSAP00000091898	Tudor domain-containing protein 7B-like isoform X1.	A-kinase anchor protein 1, mitochondrial-like isoform X1.	0.429
LOC106577912	TDRD5	ENSSSAP00000046567	ENSSSAP00000037420	Tudor domain-containing protein 7B-like isoform X1.	Tudor domain-containing protein 5-like.	0.439
LOC106577912	tdrd12	ENSSSAP00000046567	ENSSSAP00000058022	Tudor domain-containing protein 7B-like isoform X1.	Putative ATP-dependent RNA helicase TDRD12.	0.630
LOC106577912	tdrkh	ENSSSAP00000046567	ENSSSAP00000060198	Tudor domain-containing protein 7B-like isoform X1.	Tudor and KH domain-containing protein isoform X2.	0.429