18 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	phb	Prohibitin. (326 aa)
	stml2	Stomatin-like protein 2. (354 aa)
	mvp	Major vault protein. (873 aa)
	flt2	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily. (428 aa)
	STOM	Erythrocyte Band 7 integral membrane protein. (438 aa)
	LOC106584865	Stomatin-like protein 1. (493 aa)
	LOC106605398	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily. (504 aa)
	LOC106569969	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily. (682 aa)
	PHB2	Prohibitin. (340 aa)
	LOC106568660	Prohibitin-2-like isoform X1. (388 aa)
	LOC106565434	Erythrocyte band 7 integral membrane protein-like isoform X1. (304 aa)
	LOC106563232	Erythrocyte band 7 integral membrane protein-like. (291 aa)
	LOC106607260	Prohibitin. (275 aa)
	PHB2-2	Prohibitin. (325 aa)
	LOC106612814	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily. (456 aa)
	LOC106613567	Podocin-like. (416 aa)
	LOC106576878	Erlin-1. (382 aa)
	ERLIN2	Erlin-2-like isoform X1. (363 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ERLIN2	LOC106568660	ENSSSAP00000116554	ENSSSAP00000049594	Erlin-2-like isoform X1.	Prohibitin-2-like isoform X1.	0.443
ERLIN2	LOC106576878	ENSSSAP00000116554	ENSSSAP00000114361	Erlin-2-like isoform X1.	Erlin-1.	0.677
ERLIN2	LOC106584865	ENSSSAP00000116554	ENSSSAP00000019085	Erlin-2-like isoform X1.	Stomatin-like protein 1.	0.418
ERLIN2	LOC106607260	ENSSSAP00000116554	ENSSSAP00000080302	Erlin-2-like isoform X1.	Prohibitin.	0.529
ERLIN2	PHB2	ENSSSAP00000116554	ENSSSAP00000032401	Erlin-2-like isoform X1.	Prohibitin.	0.443
ERLIN2	PHB2-2	ENSSSAP00000116554	ENSSSAP00000104606	Erlin-2-like isoform X1.	Prohibitin.	0.443
ERLIN2	phb	ENSSSAP00000116554	ENSSSAP00000000433	Erlin-2-like isoform X1.	Prohibitin.	0.529
ERLIN2	stml2	ENSSSAP00000116554	ENSSSAP00000005366	Erlin-2-like isoform X1.	Stomatin-like protein 2.	0.441
LOC106563232	LOC106568660	ENSSSAP00000077931	ENSSSAP00000049594	Erythrocyte band 7 integral membrane protein-like.	Prohibitin-2-like isoform X1.	0.439
LOC106563232	LOC106569969	ENSSSAP00000077931	ENSSSAP00000030793	Erythrocyte band 7 integral membrane protein-like.	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily.	0.519
LOC106563232	LOC106605398	ENSSSAP00000077931	ENSSSAP00000023998	Erythrocyte band 7 integral membrane protein-like.	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily.	0.519
LOC106563232	LOC106607260	ENSSSAP00000077931	ENSSSAP00000080302	Erythrocyte band 7 integral membrane protein-like.	Prohibitin.	0.482
LOC106563232	LOC106612814	ENSSSAP00000077931	ENSSSAP00000105360	Erythrocyte band 7 integral membrane protein-like.	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily.	0.519
LOC106563232	PHB2	ENSSSAP00000077931	ENSSSAP00000032401	Erythrocyte band 7 integral membrane protein-like.	Prohibitin.	0.439
LOC106563232	PHB2-2	ENSSSAP00000077931	ENSSSAP00000104606	Erythrocyte band 7 integral membrane protein-like.	Prohibitin.	0.439
LOC106563232	flt2	ENSSSAP00000077931	ENSSSAP00000009669	Erythrocyte band 7 integral membrane protein-like.	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily.	0.519
LOC106563232	phb	ENSSSAP00000077931	ENSSSAP00000000433	Erythrocyte band 7 integral membrane protein-like.	Prohibitin.	0.482
LOC106565434	LOC106568660	ENSSSAP00000069663	ENSSSAP00000049594	Erythrocyte band 7 integral membrane protein-like isoform X1.	Prohibitin-2-like isoform X1.	0.439
LOC106565434	LOC106569969	ENSSSAP00000069663	ENSSSAP00000030793	Erythrocyte band 7 integral membrane protein-like isoform X1.	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily.	0.519
LOC106565434	LOC106605398	ENSSSAP00000069663	ENSSSAP00000023998	Erythrocyte band 7 integral membrane protein-like isoform X1.	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily.	0.519