14 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106600428	GATA-binding factor 6-B-like isoform X1. (515 aa)
	LOC106572125	Transcription factor GATA-5-like. (381 aa)
	gata4	Transcription factor GATA-4. (386 aa)
	gata1	GATA-binding factor 1. (424 aa)
	LOC106565550	GATA-binding factor 2-like isoform X1. (464 aa)
	LOC106566346	GATA-binding factor 2-like. (709 aa)
	LOC106566420	Transcription factor GATA-5-like. (383 aa)
	gata3	Transcription factor GATA-3 isoform X1. (441 aa)
	LOC106569316	GATA-binding factor 6-B-like. (511 aa)
	GATA2	GATA-binding factor 2-like isoform X1. (464 aa)
	LOC106576211	Transcription factor GATA-3-like isoform X1. (455 aa)
	LOC106565821	GATA-binding factor 2-like isoform X1. (460 aa)
	LOC106582882	GATA-binding factor 2-like isoform X2. (425 aa)
	LOC106582928	GATA-binding factor 2-like isoform X2. (456 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GATA2	LOC106566420	ENSSSAP00000084328	ENSSSAP00000071448	GATA-binding factor 2-like isoform X1.	Transcription factor GATA-5-like.	0.423
GATA2	LOC106572125	ENSSSAP00000084328	ENSSSAP00000013543	GATA-binding factor 2-like isoform X1.	Transcription factor GATA-5-like.	0.422
GATA2	LOC106582882	ENSSSAP00000084328	ENSSSAP00000120071	GATA-binding factor 2-like isoform X1.	GATA-binding factor 2-like isoform X2.	0.463
GATA2	gata1	ENSSSAP00000084328	ENSSSAP00000017901	GATA-binding factor 2-like isoform X1.	GATA-binding factor 1.	0.463
LOC106565550	LOC106582882	ENSSSAP00000038314	ENSSSAP00000120071	GATA-binding factor 2-like isoform X1.	GATA-binding factor 2-like isoform X2.	0.463
LOC106565550	gata1	ENSSSAP00000038314	ENSSSAP00000017901	GATA-binding factor 2-like isoform X1.	GATA-binding factor 1.	0.463
LOC106565821	LOC106582882	ENSSSAP00000115155	ENSSSAP00000120071	GATA-binding factor 2-like isoform X1.	GATA-binding factor 2-like isoform X2.	0.473
LOC106565821	gata1	ENSSSAP00000115155	ENSSSAP00000017901	GATA-binding factor 2-like isoform X1.	GATA-binding factor 1.	0.473
LOC106566346	LOC106566420	ENSSSAP00000058426	ENSSSAP00000071448	GATA-binding factor 2-like.	Transcription factor GATA-5-like.	0.413
LOC106566346	LOC106569316	ENSSSAP00000058426	ENSSSAP00000081540	GATA-binding factor 2-like.	GATA-binding factor 6-B-like.	0.431
LOC106566346	LOC106572125	ENSSSAP00000058426	ENSSSAP00000013543	GATA-binding factor 2-like.	Transcription factor GATA-5-like.	0.411
LOC106566346	LOC106582882	ENSSSAP00000058426	ENSSSAP00000120071	GATA-binding factor 2-like.	GATA-binding factor 2-like isoform X2.	0.414
LOC106566346	LOC106600428	ENSSSAP00000058426	ENSSSAP00000003924	GATA-binding factor 2-like.	GATA-binding factor 6-B-like isoform X1.	0.432
LOC106566346	gata1	ENSSSAP00000058426	ENSSSAP00000017901	GATA-binding factor 2-like.	GATA-binding factor 1.	0.415
LOC106566346	gata4	ENSSSAP00000058426	ENSSSAP00000016312	GATA-binding factor 2-like.	Transcription factor GATA-4.	0.425
LOC106566420	GATA2	ENSSSAP00000071448	ENSSSAP00000084328	Transcription factor GATA-5-like.	GATA-binding factor 2-like isoform X1.	0.423
LOC106566420	LOC106566346	ENSSSAP00000071448	ENSSSAP00000058426	Transcription factor GATA-5-like.	GATA-binding factor 2-like.	0.413
LOC106569316	LOC106566346	ENSSSAP00000081540	ENSSSAP00000058426	GATA-binding factor 6-B-like.	GATA-binding factor 2-like.	0.431
LOC106572125	GATA2	ENSSSAP00000013543	ENSSSAP00000084328	Transcription factor GATA-5-like.	GATA-binding factor 2-like isoform X1.	0.422
LOC106572125	LOC106566346	ENSSSAP00000013543	ENSSSAP00000058426	Transcription factor GATA-5-like.	GATA-binding factor 2-like.	0.411