40 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSSAP00000024615	annotation not available (148 aa)
	Tlr22a2	Toll-like receptor 13. (156 aa)
	LOC106568394	Chondroitin sulfate proteoglycan 4-like. (2276 aa)
	LOC106561028	Hyaluronidase. (492 aa)
	bgn	Biglycan; May be involved in collagen fiber assembly. Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily. (446 aa)
	arsb	Arylsulfatase B precursor. (528 aa)
	LOC106613563	FRAS1-related extracellular matrix protein 1-like. (2133 aa)
	fras1	Extracellular matrix protein FRAS1 isoform X1. (2189 aa)
	LOC106570880	Extracellular matrix protein FRAS1-like. (278 aa)
	fam149a	Protein FAM149A isoform X1. (685 aa)
	LOC106585871	Extracellular matrix protein FRAS1-like. (302 aa)
	LOC106580754	Aggrecan core protein-like isoform X2. (1891 aa)
	hexb	Beta-hexosaminidase. (547 aa)
	LOC106600559	Neurocan core protein-like. (1159 aa)
	frem1	FRAS1-related extracellular matrix protein 1. (2201 aa)
	LOC106568911	Beta-hexosaminidase. (550 aa)
	LOC106607615	Protein FAM149B1-like isoform X5. (761 aa)
	LOC106569686	Neurocan core protein-like. (1277 aa)
	LOC106605320	Brevican core protein-like isoform X1. (1613 aa)
	LOC106613725	Neurocan core protein-like. (1379 aa)
	idua	alpha-L-iduronidase isoform X1. (832 aa)
	ENSSSAP00000068135	annotation not available (83 aa)
	ids	Iduronate 2-sulfatase isoform X1. (557 aa)
	Pgs2	Decorin. (218 aa)
	vcan	Versican core protein. (364 aa)
	ENSSSAP00000059131	annotation not available (287 aa)
	LOC100136494	Decorin; May affect the rate of fibrils formation. (364 aa)
	LOC106585950	Chondroitin sulfate proteoglycan 4-like. (2117 aa)
	ENSSSAP00000055287	Iduronate 2-sulfatase. (419 aa)
	LOC106605341	Chondroitin sulfate proteoglycan 5-like isoform X5. (596 aa)
	LOC106585923	Extracellular matrix protein FRAS1-like. (2412 aa)
	fam149b1	Protein FAM149B1 isoform X2. (691 aa)
	LOC106588805	Chondroitin sulfate proteoglycan 5-like isoform X2. (640 aa)
	CSPG5	Chondroitin sulfate proteoglycan 5-like isoform X4. (604 aa)
	HEXA	Beta-hexosaminidase. (589 aa)
	cspg4	Chondroitin sulfate proteoglycan 4. (2334 aa)
	ncan	Neurocan core protein. (1440 aa)
	LOC106565982	Hyaluronidase. (444 aa)
	LOC106570919	Chondroitin sulfate proteoglycan 4-like. (2257 aa)
	LOC106566776	Hyaluronidase. (437 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000024615	LOC106568394	ENSSSAP00000024615	ENSSSAP00000023216	annotation not available	Chondroitin sulfate proteoglycan 4-like.	0.466
ENSSSAP00000024615	LOC106570919	ENSSSAP00000024615	ENSSSAP00000030164	annotation not available	Chondroitin sulfate proteoglycan 4-like.	0.466
ENSSSAP00000024615	LOC106585950	ENSSSAP00000024615	ENSSSAP00000056370	annotation not available	Chondroitin sulfate proteoglycan 4-like.	0.466
ENSSSAP00000024615	bgn	ENSSSAP00000024615	ENSSSAP00000106804	annotation not available	Biglycan; May be involved in collagen fiber assembly. Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily.	0.501
ENSSSAP00000024615	cspg4	ENSSSAP00000024615	ENSSSAP00000038615	annotation not available	Chondroitin sulfate proteoglycan 4.	0.482
ENSSSAP00000055287	arsb	ENSSSAP00000055287	ENSSSAP00000105033	Iduronate 2-sulfatase.	Arylsulfatase B precursor.	0.511
ENSSSAP00000055287	idua	ENSSSAP00000055287	ENSSSAP00000068835	Iduronate 2-sulfatase.	alpha-L-iduronidase isoform X1.	0.591
ENSSSAP00000059131	LOC106580754	ENSSSAP00000059131	ENSSSAP00000090852	annotation not available	Aggrecan core protein-like isoform X2.	0.705
ENSSSAP00000059131	LOC106605320	ENSSSAP00000059131	ENSSSAP00000021016	annotation not available	Brevican core protein-like isoform X1.	0.705
ENSSSAP00000068135	LOC106568394	ENSSSAP00000068135	ENSSSAP00000023216	annotation not available	Chondroitin sulfate proteoglycan 4-like.	0.466
ENSSSAP00000068135	LOC106570919	ENSSSAP00000068135	ENSSSAP00000030164	annotation not available	Chondroitin sulfate proteoglycan 4-like.	0.466
ENSSSAP00000068135	LOC106585950	ENSSSAP00000068135	ENSSSAP00000056370	annotation not available	Chondroitin sulfate proteoglycan 4-like.	0.466
ENSSSAP00000068135	bgn	ENSSSAP00000068135	ENSSSAP00000106804	annotation not available	Biglycan; May be involved in collagen fiber assembly. Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily.	0.501
ENSSSAP00000068135	cspg4	ENSSSAP00000068135	ENSSSAP00000038615	annotation not available	Chondroitin sulfate proteoglycan 4.	0.482
HEXA	LOC106568911	ENSSSAP00000043762	ENSSSAP00000000744	Beta-hexosaminidase.	Beta-hexosaminidase.	0.908
LOC100136494	LOC106568394	ENSSSAP00000058272	ENSSSAP00000023216	Decorin; May affect the rate of fibrils formation.	Chondroitin sulfate proteoglycan 4-like.	0.466
LOC100136494	LOC106570919	ENSSSAP00000058272	ENSSSAP00000030164	Decorin; May affect the rate of fibrils formation.	Chondroitin sulfate proteoglycan 4-like.	0.466
LOC100136494	LOC106585950	ENSSSAP00000058272	ENSSSAP00000056370	Decorin; May affect the rate of fibrils formation.	Chondroitin sulfate proteoglycan 4-like.	0.466
LOC100136494	Pgs2	ENSSSAP00000058272	ENSSSAP00000060370	Decorin; May affect the rate of fibrils formation.	Decorin.	0.901
LOC100136494	Tlr22a2	ENSSSAP00000058272	ENSSSAP00000024124	Decorin; May affect the rate of fibrils formation.	Toll-like receptor 13.	0.403