37 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	wdr41	WD repeat-containing protein 41 isoform X1. (435 aa)
	LOC106576978	Serine/threonine-protein kinase VRK1-like isoform X1. (692 aa)
	LOC106567445	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (501 aa)
	LOC106579878	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform-like. (482 aa)
	ENSSSAP00000096099	Cyclin B2. (298 aa)
	LOC106607509	Importin subunit beta-1 isoform X2. (1010 aa)
	vrk1	Serine/threonine-protein kinase VRK1; Belongs to the protein kinase superfamily. (459 aa)
	cdc2	Cell division control protein 2 homolog; Belongs to the protein kinase superfamily. (302 aa)
	LOC106603147	Barrier-to-autointegration factor. (90 aa)
	ccnb3	G2/mitotic-specific cyclin-B3; Belongs to the cyclin family. (414 aa)
	LOC106587173	G2/mitotic-specific cyclin-B1-like; Belongs to the cyclin family. (369 aa)
	LOC106604263	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (421 aa)
	LOC106576720	Barrier-to-autointegration factor-like protein. (90 aa)
	LOC106612458	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform. (638 aa)
	LOC106594559	Barrier-to-autointegration factor-like. (97 aa)
	LOC106568248	LOW QUALITY PROTEIN: ankyrin repeat and LEM domain-containing protein 2-like. (608 aa)
	LOC106566708	G2/mitotic-specific cyclin-B1-like; Belongs to the cyclin family. (403 aa)
	SIRT2	NAD-dependent protein deacetylase; NAD-dependent protein deacetylase. (413 aa)
	LOC106563483	Barrier-to-autointegration factor-like. (90 aa)
	LOC106562715	lamin-L(III)-like isoform X2; Belongs to the intermediate filament family. (585 aa)
	ccnb2	G2/mitotic-specific cyclin-B2 isoform X1; Belongs to the cyclin family. (390 aa)
	LOC106585558	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (449 aa)
	ccnb1	G2/mitotic-specific cyclin-B1; Belongs to the cyclin family. (401 aa)
	LOC106603879	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (494 aa)
	bafb	Barrier-to-autointegration factor B isoform X1. (97 aa)
	ENSSSAP00000005161	annotation not available (637 aa)
	LOC106565222	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (488 aa)
	LOC106562137	G2/mitotic-specific cyclin-B1-like isoform X1; Belongs to the cyclin family. (427 aa)
	LOC106609726	Inner nuclear membrane protein Man1-like. (562 aa)
	LOC106607826	Cyclin-dependent kinase 1-like; Belongs to the protein kinase superfamily. (302 aa)
	LOC106600802	Importin subunit beta-1-like isoform X2. (898 aa)
	cntd2	Cyclin N-terminal domain-containing protein 2; Belongs to the cyclin family. (399 aa)
	LOC106563219	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (478 aa)
	LOC106563680	G2/mitotic-specific cyclin-B3-like; Belongs to the cyclin family. (418 aa)
	LOC106602366	Serine/threonine-protein kinase VRK1-like isoform X1. (491 aa)
	LOC106612152	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (488 aa)
	lmnb2	lamin-B2; Belongs to the intermediate filament family. (589 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000005161	LOC106562715	ENSSSAP00000005161	ENSSSAP00000043570	annotation not available	lamin-L(III)-like isoform X2; Belongs to the intermediate filament family.	0.446
ENSSSAP00000005161	LOC106563219	ENSSSAP00000005161	ENSSSAP00000027574	annotation not available	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	0.662
ENSSSAP00000005161	LOC106563483	ENSSSAP00000005161	ENSSSAP00000051254	annotation not available	Barrier-to-autointegration factor-like.	0.799
ENSSSAP00000005161	LOC106565222	ENSSSAP00000005161	ENSSSAP00000006022	annotation not available	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	0.662
ENSSSAP00000005161	LOC106567445	ENSSSAP00000005161	ENSSSAP00000098519	annotation not available	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	0.662
ENSSSAP00000005161	LOC106576720	ENSSSAP00000005161	ENSSSAP00000080433	annotation not available	Barrier-to-autointegration factor-like protein.	0.799
ENSSSAP00000005161	LOC106576978	ENSSSAP00000005161	ENSSSAP00000110532	annotation not available	Serine/threonine-protein kinase VRK1-like isoform X1.	0.855
ENSSSAP00000005161	LOC106579878	ENSSSAP00000005161	ENSSSAP00000097353	annotation not available	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform-like.	0.662
ENSSSAP00000005161	LOC106585558	ENSSSAP00000005161	ENSSSAP00000117164	annotation not available	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	0.662
ENSSSAP00000005161	LOC106594559	ENSSSAP00000005161	ENSSSAP00000057751	annotation not available	Barrier-to-autointegration factor-like.	0.799
ENSSSAP00000005161	LOC106602366	ENSSSAP00000005161	ENSSSAP00000041761	annotation not available	Serine/threonine-protein kinase VRK1-like isoform X1.	0.855
ENSSSAP00000005161	LOC106603147	ENSSSAP00000005161	ENSSSAP00000090470	annotation not available	Barrier-to-autointegration factor.	0.799
ENSSSAP00000005161	LOC106603879	ENSSSAP00000005161	ENSSSAP00000114976	annotation not available	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	0.662
ENSSSAP00000005161	LOC106604263	ENSSSAP00000005161	ENSSSAP00000084505	annotation not available	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	0.662
ENSSSAP00000005161	LOC106609726	ENSSSAP00000005161	ENSSSAP00000013698	annotation not available	Inner nuclear membrane protein Man1-like.	0.559
ENSSSAP00000005161	LOC106612152	ENSSSAP00000005161	ENSSSAP00000041931	annotation not available	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	0.662
ENSSSAP00000005161	LOC106612458	ENSSSAP00000005161	ENSSSAP00000069240	annotation not available	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform.	0.887
ENSSSAP00000005161	SIRT2	ENSSSAP00000005161	ENSSSAP00000054315	annotation not available	NAD-dependent protein deacetylase; NAD-dependent protein deacetylase.	0.818
ENSSSAP00000005161	bafb	ENSSSAP00000005161	ENSSSAP00000002355	annotation not available	Barrier-to-autointegration factor B isoform X1.	0.799
ENSSSAP00000005161	lmnb2	ENSSSAP00000005161	ENSSSAP00000043235	annotation not available	lamin-B2; Belongs to the intermediate filament family.	0.446