74 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nup85	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (651 aa)
	LOC106562137	G2/mitotic-specific cyclin-B1-like isoform X1; Belongs to the cyclin family. (427 aa)
	rae1	Salmo salar mRNA export factor (rae1l), mRNA. (382 aa)
	LOC106603439	Nuclear envelope pore membrane protein POM 121-like. (1166 aa)
	NUP85	Nucleoporin 85. (740 aa)
	LOC106605894	Nuclear pore membrane glycoprotein 210-like. (208 aa)
	LOC106603332	Nuclear pore glycoprotein p62-like isoform X1. (546 aa)
	LOC106607826	Cyclin-dependent kinase 1-like; Belongs to the protein kinase superfamily. (302 aa)
	ENSSSAP00000014142	Nuclear pore complex protein Nup88-like. (760 aa)
	LOC106571901	Nuclear pore membrane glycoprotein 210-like. (1897 aa)
	LOC106564728	Nuclear pore complex protein Nup133-like. (1145 aa)
	LOC106599100	Nucleoprotein TPR-like isoform X1. (2610 aa)
	nup62	Nuclear pore glycoprotein p62. (579 aa)
	LOC106605922	Nuclear pore membrane glycoprotein 210-like isoform X1. (632 aa)
	sec13	Protein SEC13 homolog isoform X1; Belongs to the WD repeat SEC13 family. (320 aa)
	LOC106586901	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (309 aa)
	LOC106566759	Nuclear pore membrane glycoprotein 210-like isoform X1. (1870 aa)
	LOC106591976	Nuclear pore complex protein Nup50-like. (374 aa)
	LOC106560285	Nucleoprotein TPR-like isoform X6. (2395 aa)
	ENSSSAP00000025737	annotation not available (187 aa)
	cntd2	Cyclin N-terminal domain-containing protein 2; Belongs to the cyclin family. (399 aa)
	nup54	Nucleoporin p54. (534 aa)
	RAE1	mRNA export factor isoform X2. (365 aa)
	LOC106584135	Nucleoprotein TPR-like isoform X2. (2280 aa)
	seh1l	Nucleoporin SEH1 isoform X4; Belongs to the WD repeat SEC13 family. (402 aa)
	LOC106563680	G2/mitotic-specific cyclin-B3-like; Belongs to the cyclin family. (418 aa)
	nup37	Nucleoporin Nup37 isoform X4. (362 aa)
	nup188	Nucleoporin NUP188 homolog. (1736 aa)
	LOC106588909	Nuclear pore complex protein Nup153-like isoform X1. (1406 aa)
	ENSSSAP00000052702	Nucleoporin 37. (247 aa)
	LOC106590573	Nucleoporin p58/p45-like isoform X1. (573 aa)
	nup160	Nuclear pore complex protein Nup160. (1391 aa)
	LOC106560547	Serine/threonine-protein kinase Nek7-like isoform X1; Belongs to the protein kinase superfamily. (297 aa)
	LOC106582182	E3 SUMO-protein ligase RanBP2-like isoform X4. (3359 aa)
	ENSSSAP00000055896	SEC13 homolog, nuclear pore and COPII coat complex component. (187 aa)
	LOC106566708	G2/mitotic-specific cyclin-B1-like; Belongs to the cyclin family. (403 aa)
	LOC106586530	E3 SUMO-protein ligase RanBP2-like isoform X1. (3222 aa)
	LOC106594566	Nucleoporin SEH1 isoform X1; Belongs to the WD repeat SEC13 family. (312 aa)
	LOC106570714	Nucleoporin-like protein 2. (387 aa)
	NUP214	Nuclear pore complex protein Nup214-like isoform X2. (2022 aa)
	nup153	Nuclear pore complex protein Nup153 isoform X1. (1479 aa)
	LOC106587472	Nuclear pore complex protein Nup133-like. (1147 aa)
	ENSSSAP00000075469	Nucleoporin seh1-like. (189 aa)
	ENSSSAP00000076202	annotation not available (187 aa)
	LOC106598686	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (667 aa)
	ENSSSAP00000077141	annotation not available (211 aa)
	ENSSSAP00000077162	annotation not available (216 aa)
	ENSSSAP00000077168	annotation not available (218 aa)
	nupl2	Nucleoporin-like protein 2. (444 aa)
	ENSSSAP00000077364	annotation not available (399 aa)
	LOC106603451	Nuclear pore complex protein Nup88-like isoform X1. (723 aa)
	LOC106563918	Nuclear pore complex protein Nup155-like isoform X1. (1340 aa)
	NUP160	Nuclear pore complex protein Nup160-like isoform X1. (1412 aa)
	nup93	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (884 aa)
	NUP98	Nuclear pore complex protein Nup98-Nup96-like isoform X1. (1814 aa)
	LOC106567693	Nuclear envelope pore membrane protein POM 121-like isoform X2. (1303 aa)
	LOC106607749	Nucleoporin Nup43-like. (373 aa)
	RANBP2	E3 SUMO-protein ligase RanBP2-like. (3359 aa)
	LOC106587173	G2/mitotic-specific cyclin-B1-like; Belongs to the cyclin family. (369 aa)
	ccnb3	G2/mitotic-specific cyclin-B3; Belongs to the cyclin family. (414 aa)
	LOC106570951	Serine/threonine-protein kinase Nek6-like; Belongs to the protein kinase superfamily. (281 aa)
	cdc2	Cell division control protein 2 homolog; Belongs to the protein kinase superfamily. (302 aa)
	ENSSSAP00000096099	Cyclin B2. (298 aa)
	LOC106582498	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (310 aa)
	nup205	Nuclear pore complex protein Nup205. (1988 aa)
	LOC106571302	Nucleoporin Nup43-like. (373 aa)
	aaas	Aladin. (514 aa)
	nek7	Serine/threonine-protein kinase Nek7 isoform X1; Belongs to the protein kinase superfamily. (327 aa)
	nup58	Nucleoporin p58/p45 isoform X1. (625 aa)
	ndc1	Nucleoporin NDC1 isoform X1. (670 aa)
	wdr41	WD repeat-containing protein 41 isoform X1. (435 aa)
	LOC106567908	Nuclear pore complex protein Nup98-Nup96-like isoform X1. (1827 aa)
	ccnb2	G2/mitotic-specific cyclin-B2 isoform X1; Belongs to the cyclin family. (390 aa)
	ccnb1	G2/mitotic-specific cyclin-B1; Belongs to the cyclin family. (401 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000014142	ENSSSAP00000025737	ENSSSAP00000014142	ENSSSAP00000025737	Nuclear pore complex protein Nup88-like.	annotation not available	0.993
ENSSSAP00000014142	ENSSSAP00000052702	ENSSSAP00000014142	ENSSSAP00000052702	Nuclear pore complex protein Nup88-like.	Nucleoporin 37.	0.972
ENSSSAP00000014142	ENSSSAP00000055896	ENSSSAP00000014142	ENSSSAP00000055896	Nuclear pore complex protein Nup88-like.	SEC13 homolog, nuclear pore and COPII coat complex component.	0.958
ENSSSAP00000014142	ENSSSAP00000075469	ENSSSAP00000014142	ENSSSAP00000075469	Nuclear pore complex protein Nup88-like.	Nucleoporin seh1-like.	0.970
ENSSSAP00000014142	ENSSSAP00000076202	ENSSSAP00000014142	ENSSSAP00000076202	Nuclear pore complex protein Nup88-like.	annotation not available	0.938
ENSSSAP00000014142	ENSSSAP00000077141	ENSSSAP00000014142	ENSSSAP00000077141	Nuclear pore complex protein Nup88-like.	annotation not available	0.993
ENSSSAP00000014142	ENSSSAP00000077162	ENSSSAP00000014142	ENSSSAP00000077162	Nuclear pore complex protein Nup88-like.	annotation not available	0.993
ENSSSAP00000014142	ENSSSAP00000077168	ENSSSAP00000014142	ENSSSAP00000077168	Nuclear pore complex protein Nup88-like.	annotation not available	0.993
ENSSSAP00000014142	ENSSSAP00000077364	ENSSSAP00000014142	ENSSSAP00000077364	Nuclear pore complex protein Nup88-like.	annotation not available	0.993
ENSSSAP00000014142	LOC106560285	ENSSSAP00000014142	ENSSSAP00000023741	Nuclear pore complex protein Nup88-like.	Nucleoprotein TPR-like isoform X6.	0.792
ENSSSAP00000014142	LOC106563918	ENSSSAP00000014142	ENSSSAP00000083013	Nuclear pore complex protein Nup88-like.	Nuclear pore complex protein Nup155-like isoform X1.	0.996
ENSSSAP00000014142	LOC106564728	ENSSSAP00000014142	ENSSSAP00000015788	Nuclear pore complex protein Nup88-like.	Nuclear pore complex protein Nup133-like.	0.977
ENSSSAP00000014142	LOC106566759	ENSSSAP00000014142	ENSSSAP00000020715	Nuclear pore complex protein Nup88-like.	Nuclear pore membrane glycoprotein 210-like isoform X1.	0.891
ENSSSAP00000014142	LOC106567908	ENSSSAP00000014142	ENSSSAP00000114371	Nuclear pore complex protein Nup88-like.	Nuclear pore complex protein Nup98-Nup96-like isoform X1.	0.986
ENSSSAP00000014142	LOC106570714	ENSSSAP00000014142	ENSSSAP00000058479	Nuclear pore complex protein Nup88-like.	Nucleoporin-like protein 2.	0.833
ENSSSAP00000014142	LOC106571302	ENSSSAP00000014142	ENSSSAP00000100676	Nuclear pore complex protein Nup88-like.	Nucleoporin Nup43-like.	0.980
ENSSSAP00000014142	LOC106571901	ENSSSAP00000014142	ENSSSAP00000015706	Nuclear pore complex protein Nup88-like.	Nuclear pore membrane glycoprotein 210-like.	0.891
ENSSSAP00000014142	LOC106582182	ENSSSAP00000014142	ENSSSAP00000055100	Nuclear pore complex protein Nup88-like.	E3 SUMO-protein ligase RanBP2-like isoform X4.	0.993
ENSSSAP00000014142	LOC106582498	ENSSSAP00000014142	ENSSSAP00000096468	Nuclear pore complex protein Nup88-like.	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.959
ENSSSAP00000014142	LOC106584135	ENSSSAP00000014142	ENSSSAP00000031231	Nuclear pore complex protein Nup88-like.	Nucleoprotein TPR-like isoform X2.	0.792